Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19269 | 3' | -50.1 | NC_004685.1 | + | 4505 | 0.68 | 0.905737 |
Target: 5'- cCGCagGUGAUucugGCCUGUUCGGAAACc -3' miRNA: 3'- -GUGg-UACUGcug-UGGACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 19697 | 0.67 | 0.950946 |
Target: 5'- gGCCGUGGCGG-GCCgaggcGUUCGGccACa -3' miRNA: 3'- gUGGUACUGCUgUGGa----CAAGCCuuUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 51224 | 0.66 | 0.963262 |
Target: 5'- cCACCAUGcCGAgACUg--UCGGAcGCc -3' miRNA: 3'- -GUGGUACuGCUgUGGacaAGCCUuUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 45750 | 0.71 | 0.80551 |
Target: 5'- uCGCCggGGCGGCGCgUGUUCGcu-GCg -3' miRNA: 3'- -GUGGuaCUGCUGUGgACAAGCcuuUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 9710 | 0.69 | 0.860047 |
Target: 5'- gACCAUGAcCGACgcucccaagaaGCaagugaccaCUGUUCGGAAACc -3' miRNA: 3'- gUGGUACU-GCUG-----------UG---------GACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 19378 | 0.69 | 0.884099 |
Target: 5'- aGCCcgcUGAUGAacugaCUGUUCGGAAACc -3' miRNA: 3'- gUGGu--ACUGCUgug--GACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 68124 | 1.1 | 0.004122 |
Target: 5'- aCACCAUGACGACACCUGUUCGGAAACc -3' miRNA: 3'- -GUGGUACUGCUGUGGACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 5277 | 0.83 | 0.230721 |
Target: 5'- gCACUAUGGCaGC-CCUGUUCGGAAACc -3' miRNA: 3'- -GUGGUACUGcUGuGGACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 6805 | 0.73 | 0.694186 |
Target: 5'- aGCCAUcGACaACAuccugcucggcuaacCCUGUUCGGAAACc -3' miRNA: 3'- gUGGUA-CUGcUGU---------------GGACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 15456 | 0.72 | 0.733501 |
Target: 5'- -uCCGUcccGGCGAgCcCCUGUUCGGAAACc -3' miRNA: 3'- guGGUA---CUGCU-GuGGACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 1389 | 0.7 | 0.824557 |
Target: 5'- aCACUcgGACccgcggcGCGCCUGUUCGGcuuccGAACa -3' miRNA: 3'- -GUGGuaCUGc------UGUGGACAAGCC-----UUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 466 | 0.68 | 0.905737 |
Target: 5'- -cCCGUGGcCGcCACCaUG-UCGGAGACg -3' miRNA: 3'- guGGUACU-GCuGUGG-ACaAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 16003 | 0.75 | 0.555789 |
Target: 5'- uCAUCuccGGCGACugccuguaagACCUGUUCGGAAACc -3' miRNA: 3'- -GUGGua-CUGCUG----------UGGACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 43985 | 0.68 | 0.898801 |
Target: 5'- cCGCCGUGGgagcgUGACAgCCUGga-GGAAACc -3' miRNA: 3'- -GUGGUACU-----GCUGU-GGACaagCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 20336 | 0.71 | 0.76524 |
Target: 5'- aCACCGagGACGACACaCUGcugccgUCGGAGcuGCu -3' miRNA: 3'- -GUGGUa-CUGCUGUG-GACa-----AGCCUU--UG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 26506 | 0.76 | 0.491181 |
Target: 5'- cCGCCAUGugGuugaugcuACGCgggCUGUUCGGAAACc -3' miRNA: 3'- -GUGGUACugC--------UGUG---GACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 43393 | 0.68 | 0.898801 |
Target: 5'- gCACCAUGAUGACcucGCCguUGUUCaGGGu-- -3' miRNA: 3'- -GUGGUACUGCUG---UGG--ACAAG-CCUuug -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 17205 | 0.68 | 0.905737 |
Target: 5'- uCGCCAgaaACGACugagUgUGUUCGGAAACc -3' miRNA: 3'- -GUGGUac-UGCUGu---GgACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 68548 | 0.67 | 0.944842 |
Target: 5'- gGCCAguccGAUgcgGGCGCCccgaugcgucggggUGUUCGGAAACc -3' miRNA: 3'- gUGGUa---CUG---CUGUGG--------------ACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 47550 | 0.67 | 0.941358 |
Target: 5'- uGCCAggUGGCgGGCAgggUGUUCGGAAACc -3' miRNA: 3'- gUGGU--ACUG-CUGUgg-ACAAGCCUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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