Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19269 | 3' | -50.1 | NC_004685.1 | + | 58737 | 0.69 | 0.860047 |
Target: 5'- uCAUCAUGACGaACGCCUGccCGGc-GCg -3' miRNA: 3'- -GUGGUACUGC-UGUGGACaaGCCuuUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 1533 | 0.69 | 0.860047 |
Target: 5'- gGCCAguucGGCGAUGCCggUGUUCGGuuuccGAACa -3' miRNA: 3'- gUGGUa---CUGCUGUGG--ACAAGCC-----UUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 67390 | 0.7 | 0.842763 |
Target: 5'- gGCCAggGAauuucgGCCUGUUCGGAAACc -3' miRNA: 3'- gUGGUa-CUgcug--UGGACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 44728 | 0.7 | 0.833771 |
Target: 5'- uCACCGUGuGCGGCACCggcGUgcccuggugggUCGGAcccGACg -3' miRNA: 3'- -GUGGUAC-UGCUGUGGa--CA-----------AGCCU---UUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 1389 | 0.7 | 0.824557 |
Target: 5'- aCACUcgGACccgcggcGCGCCUGUUCGGcuuccGAACa -3' miRNA: 3'- -GUGGuaCUGc------UGUGGACAAGCC-----UUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 45750 | 0.71 | 0.80551 |
Target: 5'- uCGCCggGGCGGCGCgUGUUCGcu-GCg -3' miRNA: 3'- -GUGGuaCUGCUGUGgACAAGCcuuUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 63072 | 0.71 | 0.785707 |
Target: 5'- gGCUuuucgGACGGC-CCggcgGUUCGGGAACg -3' miRNA: 3'- gUGGua---CUGCUGuGGa---CAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 20336 | 0.71 | 0.76524 |
Target: 5'- aCACCGagGACGACACaCUGcugccgUCGGAGcuGCu -3' miRNA: 3'- -GUGGUa-CUGCUGUG-GACa-----AGCCUU--UG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 15456 | 0.72 | 0.733501 |
Target: 5'- -uCCGUcccGGCGAgCcCCUGUUCGGAAACc -3' miRNA: 3'- guGGUA---CUGCU-GuGGACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 6805 | 0.73 | 0.694186 |
Target: 5'- aGCCAUcGACaACAuccugcucggcuaacCCUGUUCGGAAACc -3' miRNA: 3'- gUGGUA-CUGcUGU---------------GGACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 33603 | 0.73 | 0.689758 |
Target: 5'- gGCCGcgGugGACAUCUggGUUCGGAugGACg -3' miRNA: 3'- gUGGUa-CugCUGUGGA--CAAGCCU--UUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 16003 | 0.75 | 0.555789 |
Target: 5'- uCAUCuccGGCGACugccuguaagACCUGUUCGGAAACc -3' miRNA: 3'- -GUGGua-CUGCUG----------UGGACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 66706 | 0.75 | 0.555789 |
Target: 5'- aGCCAggGAUG-C-CCUGUUCGGAAACc -3' miRNA: 3'- gUGGUa-CUGCuGuGGACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 26506 | 0.76 | 0.491181 |
Target: 5'- cCGCCAUGugGuugaugcuACGCgggCUGUUCGGAAACc -3' miRNA: 3'- -GUGGUACugC--------UGUG---GACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 5277 | 0.83 | 0.230721 |
Target: 5'- gCACUAUGGCaGC-CCUGUUCGGAAACc -3' miRNA: 3'- -GUGGUACUGcUGuGGACAAGCCUUUG- -5' |
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19269 | 3' | -50.1 | NC_004685.1 | + | 68124 | 1.1 | 0.004122 |
Target: 5'- aCACCAUGACGACACCUGUUCGGAAACc -3' miRNA: 3'- -GUGGUACUGCUGUGGACAAGCCUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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