miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19269 5' -55.8 NC_004685.1 + 1133 0.72 0.370865
Target:  5'- cGCAUCGgggcgcccgcaUCGGACUGGCCGgggCCAcagccCCGCa -3'
miRNA:   3'- -CGUAGC-----------GGCUUGACCGGUa--GGU-----GGUG- -5'
19269 5' -55.8 NC_004685.1 + 1276 0.66 0.716808
Target:  5'- gGCAUCGCC-AGCUcGGCCAcggCAUCAg -3'
miRNA:   3'- -CGUAGCGGcUUGA-CCGGUag-GUGGUg -5'
19269 5' -55.8 NC_004685.1 + 2302 0.74 0.29917
Target:  5'- ----gGCCGAAauuccCUGGCCuUCCACCGCu -3'
miRNA:   3'- cguagCGGCUU-----GACCGGuAGGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 2349 0.67 0.695611
Target:  5'- aCGUCGCCGAGgUugggcaccccgGGCCAgcguucggCCAgCACg -3'
miRNA:   3'- cGUAGCGGCUUgA-----------CCGGUa-------GGUgGUG- -5'
19269 5' -55.8 NC_004685.1 + 2736 0.68 0.619006
Target:  5'- uGCA-CGUCGAACaUGGCCAgcgUCUcgucgggcacgguGCCGCg -3'
miRNA:   3'- -CGUaGCGGCUUG-ACCGGU---AGG-------------UGGUG- -5'
19269 5' -55.8 NC_004685.1 + 3134 0.66 0.747967
Target:  5'- cGCAgggcCGCCGAcUUGGCCA-CCGacuggcaCACg -3'
miRNA:   3'- -CGUa---GCGGCUuGACCGGUaGGUg------GUG- -5'
19269 5' -55.8 NC_004685.1 + 3311 0.68 0.630923
Target:  5'- cGCAUCGUCGAcgacggcaaACUGGCCGauUUCGgCGu -3'
miRNA:   3'- -CGUAGCGGCU---------UGACCGGU--AGGUgGUg -5'
19269 5' -55.8 NC_004685.1 + 3709 0.7 0.524044
Target:  5'- uGUAUCGCgccgaguaCGGGCUGGCgCAg-CGCCACg -3'
miRNA:   3'- -CGUAGCG--------GCUUGACCG-GUagGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 3977 0.67 0.695611
Target:  5'- gGCGUCGCUGGuaUGaGCC-UUCACCAa -3'
miRNA:   3'- -CGUAGCGGCUugAC-CGGuAGGUGGUg -5'
19269 5' -55.8 NC_004685.1 + 4013 0.67 0.663395
Target:  5'- -aGUCGaCGGGCUGGCCuUCgCGCgGCu -3'
miRNA:   3'- cgUAGCgGCUUGACCGGuAG-GUGgUG- -5'
19269 5' -55.8 NC_004685.1 + 4226 0.66 0.75814
Target:  5'- cGCAccCGgCGAcGCguucGGCCAgcuucUCCACCGCg -3'
miRNA:   3'- -CGUa-GCgGCU-UGa---CCGGU-----AGGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 5458 0.66 0.716808
Target:  5'- uGCGg-GCCGGcGCgGGUCAUCCGgCGCg -3'
miRNA:   3'- -CGUagCGGCU-UGaCCGGUAGGUgGUG- -5'
19269 5' -55.8 NC_004685.1 + 5529 0.7 0.513675
Target:  5'- gGguUCuaCGAGCUGGUCAUCgGCaCGCu -3'
miRNA:   3'- -CguAGcgGCUUGACCGGUAGgUG-GUG- -5'
19269 5' -55.8 NC_004685.1 + 5984 0.68 0.641759
Target:  5'- cGCGUgcggaCGCUGuGCUGGCCcgCCGCaACc -3'
miRNA:   3'- -CGUA-----GCGGCuUGACCGGuaGGUGgUG- -5'
19269 5' -55.8 NC_004685.1 + 7918 0.67 0.706244
Target:  5'- ---cCGCCGAGauuucuucCUGGCCAUCaCGCUg- -3'
miRNA:   3'- cguaGCGGCUU--------GACCGGUAG-GUGGug -5'
19269 5' -55.8 NC_004685.1 + 8628 0.67 0.706244
Target:  5'- cCAUCGgCGAcauCgaGGUCAUCCAgCCGCa -3'
miRNA:   3'- cGUAGCgGCUu--Ga-CCGGUAGGU-GGUG- -5'
19269 5' -55.8 NC_004685.1 + 8687 0.67 0.706244
Target:  5'- uGCAUCGCCGGcAC-GGCCugcgugGUCgACC-Cg -3'
miRNA:   3'- -CGUAGCGGCU-UGaCCGG------UAGgUGGuG- -5'
19269 5' -55.8 NC_004685.1 + 9200 0.67 0.684918
Target:  5'- uGCGagGUCG-AUUGGCCAUgcgaCACCGCc -3'
miRNA:   3'- -CGUagCGGCuUGACCGGUAg---GUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 9964 0.69 0.555598
Target:  5'- ---gUGCCGGGCUGGCCGacgaCGCCGu -3'
miRNA:   3'- cguaGCGGCUUGACCGGUag--GUGGUg -5'
19269 5' -55.8 NC_004685.1 + 11122 0.7 0.493198
Target:  5'- gGCAUCGaCCuGGGCgcggUGGCCGacgCCACCAa -3'
miRNA:   3'- -CGUAGC-GG-CUUG----ACCGGUa--GGUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.