miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19269 5' -55.8 NC_004685.1 + 48380 0.68 0.587682
Target:  5'- cGCAUCGCCuc----GCCGcgCCACCACa -3'
miRNA:   3'- -CGUAGCGGcuugacCGGUa-GGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 37885 0.7 0.528214
Target:  5'- cGCGUCGgCGAgacggucgucgugucGCUcGGuCCGUCCACCcaGCg -3'
miRNA:   3'- -CGUAGCgGCU---------------UGA-CC-GGUAGGUGG--UG- -5'
19269 5' -55.8 NC_004685.1 + 28086 0.69 0.545012
Target:  5'- ---aCGCCGAGCUGcagcaGgCGUUCGCCGCg -3'
miRNA:   3'- cguaGCGGCUUGAC-----CgGUAGGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 29531 0.69 0.545012
Target:  5'- uGCucUgGCCGAGCaUGGCCGaggacaucgCCGCCAUg -3'
miRNA:   3'- -CGu-AgCGGCUUG-ACCGGUa--------GGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 33927 0.69 0.545012
Target:  5'- cGCuUUGUgGAGCU-GCCAcCCGCCACg -3'
miRNA:   3'- -CGuAGCGgCUUGAcCGGUaGGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 9964 0.69 0.555598
Target:  5'- ---gUGCCGGGCUGGCCGacgaCGCCGu -3'
miRNA:   3'- cguaGCGGCUUGACCGGUag--GUGGUg -5'
19269 5' -55.8 NC_004685.1 + 13670 0.69 0.566243
Target:  5'- aCAUCGCCGGgucguACUGGCCgcggGUgCGgCGCa -3'
miRNA:   3'- cGUAGCGGCU-----UGACCGG----UAgGUgGUG- -5'
19269 5' -55.8 NC_004685.1 + 36686 0.69 0.566243
Target:  5'- -gGUCGgCGAcauguACUGGCCugCCACCAUc -3'
miRNA:   3'- cgUAGCgGCU-----UGACCGGuaGGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 30168 0.69 0.576941
Target:  5'- gGUAUCGCgGGACcGGCUAU-CGCUGCg -3'
miRNA:   3'- -CGUAGCGgCUUGaCCGGUAgGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 50237 0.7 0.523003
Target:  5'- aGCGUUuccaGCUGGGCuuucaugUGGCCAUCCAUCGu -3'
miRNA:   3'- -CGUAG----CGGCUUG-------ACCGGUAGGUGGUg -5'
19269 5' -55.8 NC_004685.1 + 12588 0.7 0.517813
Target:  5'- aGUAUCgGCCGGACcugaaguauguucgGGCCAaCCugCGCg -3'
miRNA:   3'- -CGUAG-CGGCUUGa-------------CCGGUaGGugGUG- -5'
19269 5' -55.8 NC_004685.1 + 49983 0.7 0.513675
Target:  5'- -uGUgGCCGAACgccucGGCCcgCCACgGCc -3'
miRNA:   3'- cgUAgCGGCUUGa----CCGGuaGGUGgUG- -5'
19269 5' -55.8 NC_004685.1 + 40516 0.76 0.238681
Target:  5'- gGCGUUccugGCCGGACUguucGGCUAUCCgACCGCa -3'
miRNA:   3'- -CGUAG----CGGCUUGA----CCGGUAGG-UGGUG- -5'
19269 5' -55.8 NC_004685.1 + 13750 0.74 0.321815
Target:  5'- gGCAUCGCCGGGCUGcuGCUggCgUACCGCc -3'
miRNA:   3'- -CGUAGCGGCUUGAC--CGGuaG-GUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 17265 0.73 0.345717
Target:  5'- gGCAUCaGCUGGAg-GGUCGUCgGCCACg -3'
miRNA:   3'- -CGUAG-CGGCUUgaCCGGUAGgUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 13879 0.71 0.434209
Target:  5'- uGUGUCGaguaccCCGGuguGCUGGCCAUcuggacgagCCACCACg -3'
miRNA:   3'- -CGUAGC------GGCU---UGACCGGUA---------GGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 58355 0.71 0.434209
Target:  5'- cGgGUCGCCGGucGCgcacGGcCCAUCCACgACu -3'
miRNA:   3'- -CgUAGCGGCU--UGa---CC-GGUAGGUGgUG- -5'
19269 5' -55.8 NC_004685.1 + 51540 0.71 0.463212
Target:  5'- aCAUCGCCuuGAGCgccgcGGUCGgugCCACCGCc -3'
miRNA:   3'- cGUAGCGG--CUUGa----CCGGUa--GGUGGUG- -5'
19269 5' -55.8 NC_004685.1 + 62125 0.7 0.4831
Target:  5'- -gGUUGaCCGGGCUGGCCAccaggcgggCCACCuGCa -3'
miRNA:   3'- cgUAGC-GGCUUGACCGGUa--------GGUGG-UG- -5'
19269 5' -55.8 NC_004685.1 + 29969 0.7 0.513675
Target:  5'- gGCcgCGCUGaAGCUGGCCG-CCGCgGu -3'
miRNA:   3'- -CGuaGCGGC-UUGACCGGUaGGUGgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.