Results 1 - 20 of 85 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 67793 | 1.07 | 0.000204 |
Target: 5'- gCAGCGGGCACGGCCGCGGCCUGACCGa -3' miRNA: 3'- -GUCGCCCGUGCCGGCGCCGGACUGGC- -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 53354 | 0.78 | 0.038434 |
Target: 5'- cCAGCGcGGCGCcgguGGCCGCGGCgaugCUGGCCa -3' miRNA: 3'- -GUCGC-CCGUG----CCGGCGCCG----GACUGGc -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 135 | 0.78 | 0.04398 |
Target: 5'- -cGCGGGCGCGGCUGcCGGggUGGCCGg -3' miRNA: 3'- guCGCCCGUGCCGGC-GCCggACUGGC- -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 48315 | 0.75 | 0.069307 |
Target: 5'- -uGCGGGCACGgguccagcuGCCGuCGGCCUGaAUCGg -3' miRNA: 3'- guCGCCCGUGC---------CGGC-GCCGGAC-UGGC- -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 8465 | 0.75 | 0.073084 |
Target: 5'- aAGaCGGGUGCGGCCGCG--CUGGCCGa -3' miRNA: 3'- gUC-GCCCGUGCCGGCGCcgGACUGGC- -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 45081 | 0.73 | 0.090258 |
Target: 5'- aGGUGGGCGCGG-UGUGGCCgGACUa -3' miRNA: 3'- gUCGCCCGUGCCgGCGCCGGaCUGGc -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 37680 | 0.73 | 0.097638 |
Target: 5'- cCGGCGGGaccaGCGGCUcCGGCUUG-CCGg -3' miRNA: 3'- -GUCGCCCg---UGCCGGcGCCGGACuGGC- -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 74 | 0.72 | 0.108369 |
Target: 5'- gGGCGGGCGCGcGCCcguguggacGCGcGCCcguUGGCCGc -3' miRNA: 3'- gUCGCCCGUGC-CGG---------CGC-CGG---ACUGGC- -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 45825 | 0.72 | 0.111219 |
Target: 5'- gCAGCGcaucGGCACcGUCGUGGCC-GACCGg -3' miRNA: 3'- -GUCGC----CCGUGcCGGCGCCGGaCUGGC- -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 36870 | 0.72 | 0.113845 |
Target: 5'- gCGGCGuccGGCAacaucguCGGCCGCGGCCgcgGGCaCGu -3' miRNA: 3'- -GUCGC---CCGU-------GCCGGCGCCGGa--CUG-GC- -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 750 | 0.72 | 0.11683 |
Target: 5'- aAGCGuGGCcugcucggucuugGCGGCagcaGCGGCCUGAUCc -3' miRNA: 3'- gUCGC-CCG-------------UGCCGg---CGCCGGACUGGc -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 46642 | 0.72 | 0.120198 |
Target: 5'- uGGCGGGCGCGGCgCuguaCGGCCUGuuUGu -3' miRNA: 3'- gUCGCCCGUGCCG-Gc---GCCGGACugGC- -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 53545 | 0.72 | 0.123337 |
Target: 5'- uGGCGcGGCGCGGCCGacuccaggGGaCCgUGGCCGu -3' miRNA: 3'- gUCGC-CCGUGCCGGCg-------CC-GG-ACUGGC- -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 32199 | 0.71 | 0.126553 |
Target: 5'- -cGCGGGCuACGGCgGCGGCUucaaggUGGgCGg -3' miRNA: 3'- guCGCCCG-UGCCGgCGCCGG------ACUgGC- -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 43864 | 0.71 | 0.133219 |
Target: 5'- --aCGGGCGagaGcCCGCGGCgCUGACCGg -3' miRNA: 3'- gucGCCCGUg--CcGGCGCCG-GACUGGC- -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 38305 | 0.71 | 0.143825 |
Target: 5'- uCGGCGaGG-ACGGUgaaggCGCgGGCCUGGCCGa -3' miRNA: 3'- -GUCGC-CCgUGCCG-----GCG-CCGGACUGGC- -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 58002 | 0.7 | 0.147528 |
Target: 5'- gUAGCGGGCACGGuuGgCGaCCUGcgacGCCu -3' miRNA: 3'- -GUCGCCCGUGCCggC-GCcGGAC----UGGc -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 62260 | 0.7 | 0.147528 |
Target: 5'- gGGCGGggagugauacGCGCGGCgCGCuGGCCUGcGCCc -3' miRNA: 3'- gUCGCC----------CGUGCCG-GCG-CCGGAC-UGGc -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 37926 | 0.7 | 0.147528 |
Target: 5'- cCAGCGGGCG-GGUgGuCGGagCUGGCCGg -3' miRNA: 3'- -GUCGCCCGUgCCGgC-GCCg-GACUGGC- -5' |
|||||||
19270 | 3' | -65.5 | NC_004685.1 | + | 2981 | 0.7 | 0.149034 |
Target: 5'- cCAGauGGCGCGGUCGuCGGCgugcgccacagcgggUUGACCGg -3' miRNA: 3'- -GUCgcCCGUGCCGGC-GCCG---------------GACUGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home