miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19270 3' -65.5 NC_004685.1 + 3215 0.68 0.225004
Target:  5'- gCGGCggaaaugccgGGGCGgGGUCGgGGUCgGGCCGg -3'
miRNA:   3'- -GUCG----------CCCGUgCCGGCgCCGGaCUGGC- -5'
19270 3' -65.5 NC_004685.1 + 39406 0.7 0.155197
Target:  5'- uGGUGGGCACuGGCU-CGGCCUGuacACCc -3'
miRNA:   3'- gUCGCCCGUG-CCGGcGCCGGAC---UGGc -5'
19270 3' -65.5 NC_004685.1 + 64915 0.7 0.166958
Target:  5'- -uGCGGGCAcaguaucCGGCCaGCGcGCC-GACCa -3'
miRNA:   3'- guCGCCCGU-------GCCGG-CGC-CGGaCUGGc -5'
19270 3' -65.5 NC_004685.1 + 2851 0.7 0.172917
Target:  5'- -cGCGGGUccacugcuugggcuuGCGGCCGgugcgcaCGGCgCUGGCCa -3'
miRNA:   3'- guCGCCCG---------------UGCCGGC-------GCCG-GACUGGc -5'
19270 3' -65.5 NC_004685.1 + 29875 0.69 0.19433
Target:  5'- gCAGCGaagguacucGCGCGGCUGgcugaGGCCUGGCUGu -3'
miRNA:   3'- -GUCGCc--------CGUGCCGGCg----CCGGACUGGC- -5'
19270 3' -65.5 NC_004685.1 + 50322 0.69 0.19433
Target:  5'- uCAGCGGGCu--GCCGgGGCC-GACUu -3'
miRNA:   3'- -GUCGCCCGugcCGGCgCCGGaCUGGc -5'
19270 3' -65.5 NC_004685.1 + 25958 0.68 0.209183
Target:  5'- gAGCGGGgGaauGUCGCGGCC-GACCu -3'
miRNA:   3'- gUCGCCCgUgc-CGGCGCCGGaCUGGc -5'
19270 3' -65.5 NC_004685.1 + 62177 0.68 0.209183
Target:  5'- -cGcCGGGUACGGCuUGCGGCCcGcGCCu -3'
miRNA:   3'- guC-GCCCGUGCCG-GCGCCGGaC-UGGc -5'
19270 3' -65.5 NC_004685.1 + 54129 0.68 0.219621
Target:  5'- uCGGUGGGU-CGGCCuCGGCCU-AUCGg -3'
miRNA:   3'- -GUCGCCCGuGCCGGcGCCGGAcUGGC- -5'
19270 3' -65.5 NC_004685.1 + 2981 0.7 0.149034
Target:  5'- cCAGauGGCGCGGUCGuCGGCgugcgccacagcgggUUGACCGg -3'
miRNA:   3'- -GUCgcCCGUGCCGGC-GCCG---------------GACUGGC- -5'
19270 3' -65.5 NC_004685.1 + 37926 0.7 0.147528
Target:  5'- cCAGCGGGCG-GGUgGuCGGagCUGGCCGg -3'
miRNA:   3'- -GUCGCCCGUgCCGgC-GCCg-GACUGGC- -5'
19270 3' -65.5 NC_004685.1 + 58002 0.7 0.147528
Target:  5'- gUAGCGGGCACGGuuGgCGaCCUGcgacGCCu -3'
miRNA:   3'- -GUCGCCCGUGCCggC-GCcGGAC----UGGc -5'
19270 3' -65.5 NC_004685.1 + 48315 0.75 0.069307
Target:  5'- -uGCGGGCACGgguccagcuGCCGuCGGCCUGaAUCGg -3'
miRNA:   3'- guCGCCCGUGC---------CGGC-GCCGGAC-UGGC- -5'
19270 3' -65.5 NC_004685.1 + 8465 0.75 0.073084
Target:  5'- aAGaCGGGUGCGGCCGCG--CUGGCCGa -3'
miRNA:   3'- gUC-GCCCGUGCCGGCGCcgGACUGGC- -5'
19270 3' -65.5 NC_004685.1 + 45081 0.73 0.090258
Target:  5'- aGGUGGGCGCGG-UGUGGCCgGACUa -3'
miRNA:   3'- gUCGCCCGUGCCgGCGCCGGaCUGGc -5'
19270 3' -65.5 NC_004685.1 + 45825 0.72 0.111219
Target:  5'- gCAGCGcaucGGCACcGUCGUGGCC-GACCGg -3'
miRNA:   3'- -GUCGC----CCGUGcCGGCGCCGGaCUGGC- -5'
19270 3' -65.5 NC_004685.1 + 36870 0.72 0.113845
Target:  5'- gCGGCGuccGGCAacaucguCGGCCGCGGCCgcgGGCaCGu -3'
miRNA:   3'- -GUCGC---CCGU-------GCCGGCGCCGGa--CUG-GC- -5'
19270 3' -65.5 NC_004685.1 + 46642 0.72 0.120198
Target:  5'- uGGCGGGCGCGGCgCuguaCGGCCUGuuUGu -3'
miRNA:   3'- gUCGCCCGUGCCG-Gc---GCCGGACugGC- -5'
19270 3' -65.5 NC_004685.1 + 32199 0.71 0.126553
Target:  5'- -cGCGGGCuACGGCgGCGGCUucaaggUGGgCGg -3'
miRNA:   3'- guCGCCCG-UGCCGgCGCCGG------ACUgGC- -5'
19270 3' -65.5 NC_004685.1 + 38305 0.71 0.143825
Target:  5'- uCGGCGaGG-ACGGUgaaggCGCgGGCCUGGCCGa -3'
miRNA:   3'- -GUCGC-CCgUGCCG-----GCG-CCGGACUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.