miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19271 5' -51.7 NC_004685.1 + 31993 0.69 0.757958
Target:  5'- aACAACACCGGCaaGCCGgagccGCUGGUc--- -3'
miRNA:   3'- -UGUUGUGGUUG--CGGUa----CGACCGuaag -5'
19271 5' -51.7 NC_004685.1 + 16568 0.69 0.747333
Target:  5'- aGCGACGaCGGCGgCGUGCUGGUcaUCc -3'
miRNA:   3'- -UGUUGUgGUUGCgGUACGACCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 3733 0.69 0.736585
Target:  5'- cGCAGCGCC-ACGUCAcGCUGGgCGa-- -3'
miRNA:   3'- -UGUUGUGGuUGCGGUaCGACC-GUaag -5'
19271 5' -51.7 NC_004685.1 + 65502 0.7 0.725726
Target:  5'- uCGGCAcCCAACugGCCGaGCUGGCGggcgUCg -3'
miRNA:   3'- uGUUGU-GGUUG--CGGUaCGACCGUa---AG- -5'
19271 5' -51.7 NC_004685.1 + 50234 0.7 0.725726
Target:  5'- cCGAcCGCCGacGCGCCAcGCacGGCGUUCg -3'
miRNA:   3'- uGUU-GUGGU--UGCGGUaCGa-CCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 47615 0.7 0.725726
Target:  5'- gACGGCucCCAguGgGCCGUGCUcGGCGUUg -3'
miRNA:   3'- -UGUUGu-GGU--UgCGGUACGA-CCGUAAg -5'
19271 5' -51.7 NC_004685.1 + 57723 0.7 0.725726
Target:  5'- gUAAC-CCGACGCCGcGCUGcGUcgUCg -3'
miRNA:   3'- uGUUGuGGUUGCGGUaCGAC-CGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 48380 0.7 0.725726
Target:  5'- cGCAuCGCCucgccGCGCCAccacagcuguUGCUGGCAg-- -3'
miRNA:   3'- -UGUuGUGGu----UGCGGU----------ACGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 27058 0.7 0.714769
Target:  5'- cCAGauCACCAGCccacCCAUGCUGGCGg-- -3'
miRNA:   3'- uGUU--GUGGUUGc---GGUACGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 35908 0.7 0.703726
Target:  5'- gGCuuCAUCAACGCCAUG-UGG-AUUCg -3'
miRNA:   3'- -UGuuGUGGUUGCGGUACgACCgUAAG- -5'
19271 5' -51.7 NC_004685.1 + 11357 0.7 0.703726
Target:  5'- cCGACACCGAgGCUGUGCcGGCc--- -3'
miRNA:   3'- uGUUGUGGUUgCGGUACGaCCGuaag -5'
19271 5' -51.7 NC_004685.1 + 48377 0.7 0.703726
Target:  5'- gACAGCGCCgGugGagGUGCUGGCGa-- -3'
miRNA:   3'- -UGUUGUGG-UugCggUACGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 53358 0.7 0.703726
Target:  5'- cGCGGCGCCgGugGCCGcggcgaUGCUGGCc--- -3'
miRNA:   3'- -UGUUGUGG-UugCGGU------ACGACCGuaag -5'
19271 5' -51.7 NC_004685.1 + 11796 0.7 0.700398
Target:  5'- cGCGGCGCauggucgaagaguuCAACGCCAagGC-GGCGUUCu -3'
miRNA:   3'- -UGUUGUG--------------GUUGCGGUa-CGaCCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 3684 0.71 0.658935
Target:  5'- cGCGACGCCGACgGCUcgGCgcgGGUGUaUCg -3'
miRNA:   3'- -UGUUGUGGUUG-CGGuaCGa--CCGUA-AG- -5'
19271 5' -51.7 NC_004685.1 + 6350 0.71 0.657807
Target:  5'- uGCGACGCCGAaaucgucCGCUAccGCUGGCAg-- -3'
miRNA:   3'- -UGUUGUGGUU-------GCGGUa-CGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 66197 0.71 0.647642
Target:  5'- aGCAGCuuCGACGCCAcGCUGgGCAc-- -3'
miRNA:   3'- -UGUUGugGUUGCGGUaCGAC-CGUaag -5'
19271 5' -51.7 NC_004685.1 + 39270 0.71 0.636335
Target:  5'- gGCAACGCCu-CGCCGUGUUcGGCc--- -3'
miRNA:   3'- -UGUUGUGGuuGCGGUACGA-CCGuaag -5'
19271 5' -51.7 NC_004685.1 + 51970 0.71 0.625023
Target:  5'- cGCAGCACCAacGCGCCAaccagGGCggUCa -3'
miRNA:   3'- -UGUUGUGGU--UGCGGUacga-CCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 18925 0.72 0.60243
Target:  5'- gACGGCGCgGGCGagAUGCUGGCGg-- -3'
miRNA:   3'- -UGUUGUGgUUGCggUACGACCGUaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.