miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19271 5' -51.7 NC_004685.1 + 67571 0.67 0.87149
Target:  5'- cGCAGCGCCucACGCUcgGCUucgagcuuGGCGa-- -3'
miRNA:   3'- -UGUUGUGGu-UGCGGuaCGA--------CCGUaag -5'
19271 5' -51.7 NC_004685.1 + 20032 0.67 0.863253
Target:  5'- cGCuACACCAAgaccCGCCggGUgaaccgGGCGUUCc -3'
miRNA:   3'- -UGuUGUGGUU----GCGGuaCGa-----CCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 29203 0.67 0.863253
Target:  5'- aGCAGCGCCugaaucugcggcAGCGCCAgGUUcGGCGUcCa -3'
miRNA:   3'- -UGUUGUGG------------UUGCGGUaCGA-CCGUAaG- -5'
19271 5' -51.7 NC_004685.1 + 5975 0.67 0.846023
Target:  5'- uACGAUccgcgcguGCgGACGCUGUGCUGGCc--- -3'
miRNA:   3'- -UGUUG--------UGgUUGCGGUACGACCGuaag -5'
19271 5' -51.7 NC_004685.1 + 65287 0.67 0.846023
Target:  5'- cGCGGCgACCGGCGaCUAcaagGCUGGCGg-- -3'
miRNA:   3'- -UGUUG-UGGUUGC-GGUa---CGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 60248 0.67 0.846023
Target:  5'- gGCGGCACCAGCGacaaCGcGCgGGCGa-- -3'
miRNA:   3'- -UGUUGUGGUUGCg---GUaCGaCCGUaag -5'
19271 5' -51.7 NC_004685.1 + 14406 0.67 0.846023
Target:  5'- uGCAGCGgCAGCGUCA-GCUGcGCGc-- -3'
miRNA:   3'- -UGUUGUgGUUGCGGUaCGAC-CGUaag -5'
19271 5' -51.7 NC_004685.1 + 35618 0.67 0.837047
Target:  5'- uCAGCuuCCAcACGCCGaaggGCUGGCAg-- -3'
miRNA:   3'- uGUUGu-GGU-UGCGGUa---CGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 48332 0.67 0.837047
Target:  5'- cCAGauCGCCGACGCCAcguUGUcggcggUGGCAUUg -3'
miRNA:   3'- uGUU--GUGGUUGCGGU---ACG------ACCGUAAg -5'
19271 5' -51.7 NC_004685.1 + 1077 0.67 0.837047
Target:  5'- gGCAAUgguuagACCAuuGgGCCGgccgGCUGGUGUUCg -3'
miRNA:   3'- -UGUUG------UGGU--UgCGGUa---CGACCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 3618 0.68 0.827844
Target:  5'- gGCGGCACCAACGaCCGcccgcuUGCcuacgugGGCAUc- -3'
miRNA:   3'- -UGUUGUGGUUGC-GGU------ACGa------CCGUAag -5'
19271 5' -51.7 NC_004685.1 + 66805 0.68 0.827844
Target:  5'- cCGAUccugGCCAGCGCCGUGCgcaccGGCc--- -3'
miRNA:   3'- uGUUG----UGGUUGCGGUACGa----CCGuaag -5'
19271 5' -51.7 NC_004685.1 + 69349 0.68 0.827844
Target:  5'- uCGACcCCGGCGUCAUGUUGaGCGg-- -3'
miRNA:   3'- uGUUGuGGUUGCGGUACGAC-CGUaag -5'
19271 5' -51.7 NC_004685.1 + 14519 0.68 0.818424
Target:  5'- --cGCGCCGacgcGCGCCGcGCUGGUGcUCg -3'
miRNA:   3'- uguUGUGGU----UGCGGUaCGACCGUaAG- -5'
19271 5' -51.7 NC_004685.1 + 37447 0.68 0.818424
Target:  5'- gGCAACGCgcuCAACGCgcUGUcGGCGUUCu -3'
miRNA:   3'- -UGUUGUG---GUUGCGguACGaCCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 51899 0.68 0.798973
Target:  5'- cCAGCACCGugGCCugaGC-GGCAc-- -3'
miRNA:   3'- uGUUGUGGUugCGGua-CGaCCGUaag -5'
19271 5' -51.7 NC_004685.1 + 55474 0.68 0.798973
Target:  5'- gACGACACCGACaGCC--GCUuGGCGa-- -3'
miRNA:   3'- -UGUUGUGGUUG-CGGuaCGA-CCGUaag -5'
19271 5' -51.7 NC_004685.1 + 27227 0.68 0.798973
Target:  5'- gGCAcCACCGACGCCGccaaggGCUgucgugGGCggUCa -3'
miRNA:   3'- -UGUuGUGGUUGCGGUa-----CGA------CCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 23049 0.69 0.778786
Target:  5'- uACAGCGCCGcgccCGCCAUGUgaaGGUAg-- -3'
miRNA:   3'- -UGUUGUGGUu---GCGGUACGa--CCGUaag -5'
19271 5' -51.7 NC_004685.1 + 9211 0.69 0.768446
Target:  5'- gGCGACcCCGACGCCAaGgaGGCc--- -3'
miRNA:   3'- -UGUUGuGGUUGCGGUaCgaCCGuaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.