miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19271 5' -51.7 NC_004685.1 + 14406 0.67 0.846023
Target:  5'- uGCAGCGgCAGCGUCA-GCUGcGCGc-- -3'
miRNA:   3'- -UGUUGUgGUUGCGGUaCGAC-CGUaag -5'
19271 5' -51.7 NC_004685.1 + 14519 0.68 0.818424
Target:  5'- --cGCGCCGacgcGCGCCGcGCUGGUGcUCg -3'
miRNA:   3'- uguUGUGGU----UGCGGUaCGACCGUaAG- -5'
19271 5' -51.7 NC_004685.1 + 16333 0.74 0.492479
Target:  5'- cGCGGcCACCGGCGCCGcGCUGGaggugccccaGUUCg -3'
miRNA:   3'- -UGUU-GUGGUUGCGGUaCGACCg---------UAAG- -5'
19271 5' -51.7 NC_004685.1 + 16568 0.69 0.747333
Target:  5'- aGCGACGaCGGCGgCGUGCUGGUcaUCc -3'
miRNA:   3'- -UGUUGUgGUUGCgGUACGACCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 18379 0.74 0.471527
Target:  5'- -aGACACCGACGCugaCAUGCUGaUAUUCg -3'
miRNA:   3'- ugUUGUGGUUGCG---GUACGACcGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 18925 0.72 0.60243
Target:  5'- gACGGCGCgGGCGagAUGCUGGCGg-- -3'
miRNA:   3'- -UGUUGUGgUUGCggUACGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 18940 0.66 0.887173
Target:  5'- -gAugGCC-GCGCUGUGCcUGGCGcUCg -3'
miRNA:   3'- ugUugUGGuUGCGGUACG-ACCGUaAG- -5'
19271 5' -51.7 NC_004685.1 + 19434 0.77 0.306965
Target:  5'- uACAagcGCGCCgAACGCCGUGCgUGGCGcgUCg -3'
miRNA:   3'- -UGU---UGUGG-UUGCGGUACG-ACCGUa-AG- -5'
19271 5' -51.7 NC_004685.1 + 20032 0.67 0.863253
Target:  5'- cGCuACACCAAgaccCGCCggGUgaaccgGGCGUUCc -3'
miRNA:   3'- -UGuUGUGGUU----GCGGuaCGa-----CCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 20872 0.72 0.60243
Target:  5'- gGCAACGCCAGCGCCGcUGaucgcCUGGaggUCu -3'
miRNA:   3'- -UGUUGUGGUUGCGGU-AC-----GACCguaAG- -5'
19271 5' -51.7 NC_004685.1 + 23049 0.69 0.778786
Target:  5'- uACAGCGCCGcgccCGCCAUGUgaaGGUAg-- -3'
miRNA:   3'- -UGUUGUGGUu---GCGGUACGa--CCGUaag -5'
19271 5' -51.7 NC_004685.1 + 23739 0.66 0.879466
Target:  5'- uGCucCACCAGCgucGCCGUGUcgGGCAggUCc -3'
miRNA:   3'- -UGuuGUGGUUG---CGGUACGa-CCGUa-AG- -5'
19271 5' -51.7 NC_004685.1 + 27058 0.7 0.714769
Target:  5'- cCAGauCACCAGCccacCCAUGCUGGCGg-- -3'
miRNA:   3'- uGUU--GUGGUUGc---GGUACGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 27227 0.68 0.798973
Target:  5'- gGCAcCACCGACGCCGccaaggGCUgucgugGGCggUCa -3'
miRNA:   3'- -UGUuGUGGUUGCGGUa-----CGA------CCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 28072 0.73 0.535588
Target:  5'- gGCugagguCGCCGACGCCGaGCUgcagcaGGCGUUCg -3'
miRNA:   3'- -UGuu----GUGGUUGCGGUaCGA------CCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 29203 0.67 0.863253
Target:  5'- aGCAGCGCCugaaucugcggcAGCGCCAgGUUcGGCGUcCa -3'
miRNA:   3'- -UGUUGUGG------------UUGCGGUaCGA-CCGUAaG- -5'
19271 5' -51.7 NC_004685.1 + 31802 0.66 0.908622
Target:  5'- cACGACgACCGucuCGCCGacgcgGCUGGCu--- -3'
miRNA:   3'- -UGUUG-UGGUu--GCGGUa----CGACCGuaag -5'
19271 5' -51.7 NC_004685.1 + 31993 0.69 0.757958
Target:  5'- aACAACACCGGCaaGCCGgagccGCUGGUc--- -3'
miRNA:   3'- -UGUUGUGGUUG--CGGUa----CGACCGuaag -5'
19271 5' -51.7 NC_004685.1 + 35618 0.67 0.837047
Target:  5'- uCAGCuuCCAcACGCCGaaggGCUGGCAg-- -3'
miRNA:   3'- uGUUGu-GGU-UGCGGUa---CGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 35908 0.7 0.703726
Target:  5'- gGCuuCAUCAACGCCAUG-UGG-AUUCg -3'
miRNA:   3'- -UGuuGUGGUUGCGGUACgACCgUAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.