miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19271 5' -51.7 NC_004685.1 + 258 0.66 0.899639
Target:  5'- gACGACACCGacucuugcucgucuGCGCCggGUucggGGUcgUCg -3'
miRNA:   3'- -UGUUGUGGU--------------UGCGGuaCGa---CCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 1077 0.67 0.837047
Target:  5'- gGCAAUgguuagACCAuuGgGCCGgccgGCUGGUGUUCg -3'
miRNA:   3'- -UGUUG------UGGU--UgCGGUa---CGACCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 3618 0.68 0.827844
Target:  5'- gGCGGCACCAACGaCCGcccgcuUGCcuacgugGGCAUc- -3'
miRNA:   3'- -UGUUGUGGUUGC-GGU------ACGa------CCGUAag -5'
19271 5' -51.7 NC_004685.1 + 3684 0.71 0.658935
Target:  5'- cGCGACGCCGACgGCUcgGCgcgGGUGUaUCg -3'
miRNA:   3'- -UGUUGUGGUUG-CGGuaCGa--CCGUA-AG- -5'
19271 5' -51.7 NC_004685.1 + 3733 0.69 0.736585
Target:  5'- cGCAGCGCC-ACGUCAcGCUGGgCGa-- -3'
miRNA:   3'- -UGUUGUGGuUGCGGUaCGACC-GUaag -5'
19271 5' -51.7 NC_004685.1 + 5975 0.67 0.846023
Target:  5'- uACGAUccgcgcguGCgGACGCUGUGCUGGCc--- -3'
miRNA:   3'- -UGUUG--------UGgUUGCGGUACGACCGuaag -5'
19271 5' -51.7 NC_004685.1 + 6350 0.71 0.657807
Target:  5'- uGCGACGCCGAaaucgucCGCUAccGCUGGCAg-- -3'
miRNA:   3'- -UGUUGUGGUU-------GCGGUa-CGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 6536 0.73 0.529031
Target:  5'- cAUGACGCCGACgGCCGagcugauccuggaggUGCUGGCAg-- -3'
miRNA:   3'- -UGUUGUGGUUG-CGGU---------------ACGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 8652 0.72 0.556532
Target:  5'- aGCcGCACCAucgguacGCGgUGUGCUGGCcgUCg -3'
miRNA:   3'- -UGuUGUGGU-------UGCgGUACGACCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 8939 0.72 0.557641
Target:  5'- cACGACACCugccuGCGgCAugUGCUGGCGaUCc -3'
miRNA:   3'- -UGUUGUGGu----UGCgGU--ACGACCGUaAG- -5'
19271 5' -51.7 NC_004685.1 + 9134 0.66 0.879466
Target:  5'- aGCAacuGCAUCAACGCC-UGCUGcaGCGg-- -3'
miRNA:   3'- -UGU---UGUGGUUGCGGuACGAC--CGUaag -5'
19271 5' -51.7 NC_004685.1 + 9211 0.69 0.768446
Target:  5'- gGCGACcCCGACGCCAaGgaGGCc--- -3'
miRNA:   3'- -UGUUGuGGUUGCGGUaCgaCCGuaag -5'
19271 5' -51.7 NC_004685.1 + 10140 0.66 0.894604
Target:  5'- uGCGAC-CCGACGg---GCUGGCAggCa -3'
miRNA:   3'- -UGUUGuGGUUGCgguaCGACCGUaaG- -5'
19271 5' -51.7 NC_004685.1 + 10938 0.75 0.431044
Target:  5'- uGCAGgACC-GCGCCggGCaGGCGUUCg -3'
miRNA:   3'- -UGUUgUGGuUGCGGuaCGaCCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 11357 0.7 0.703726
Target:  5'- cCGACACCGAgGCUGUGCcGGCc--- -3'
miRNA:   3'- uGUUGUGGUUgCGGUACGaCCGuaag -5'
19271 5' -51.7 NC_004685.1 + 11372 0.66 0.887173
Target:  5'- -gGugACCAcuCGCCGgagGCUGGCGc-- -3'
miRNA:   3'- ugUugUGGUu-GCGGUa--CGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 11796 0.7 0.700398
Target:  5'- cGCGGCGCauggucgaagaguuCAACGCCAagGC-GGCGUUCu -3'
miRNA:   3'- -UGUUGUG--------------GUUGCGGUa-CGaCCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 12021 0.66 0.879466
Target:  5'- -gGACGCCAACGCCGacgugaaGCUcGCggUCa -3'
miRNA:   3'- ugUUGUGGUUGCGGUa------CGAcCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 13747 0.66 0.879466
Target:  5'- gACGGCAUCGccGgGCUGcUGCUGGCGUa- -3'
miRNA:   3'- -UGUUGUGGU--UgCGGU-ACGACCGUAag -5'
19271 5' -51.7 NC_004685.1 + 13774 0.66 0.911288
Target:  5'- uACcGCcCCGAUGgCGUGCUGGCccacaccgucggcggGUUCg -3'
miRNA:   3'- -UGuUGuGGUUGCgGUACGACCG---------------UAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.