Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19271 | 5' | -51.7 | NC_004685.1 | + | 67129 | 1.09 | 0.002438 |
Target: 5'- gACAACACCAACGCCAUGCUGGCAUUCc -3' miRNA: 3'- -UGUUGUGGUUGCGGUACGACCGUAAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 67879 | 0.8 | 0.223944 |
Target: 5'- cGCGgcGCGCCGGCGUCGcGCUGGCcgUCg -3' miRNA: 3'- -UGU--UGUGGUUGCGGUaCGACCGuaAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 19434 | 0.77 | 0.306965 |
Target: 5'- uACAagcGCGCCgAACGCCGUGCgUGGCGcgUCg -3' miRNA: 3'- -UGU---UGUGG-UUGCGGUACG-ACCGUa-AG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 10938 | 0.75 | 0.431044 |
Target: 5'- uGCAGgACC-GCGCCggGCaGGCGUUCg -3' miRNA: 3'- -UGUUgUGGuUGCGGuaCGaCCGUAAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 18379 | 0.74 | 0.471527 |
Target: 5'- -aGACACCGACGCugaCAUGCUGaUAUUCg -3' miRNA: 3'- ugUUGUGGUUGCG---GUACGACcGUAAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 16333 | 0.74 | 0.492479 |
Target: 5'- cGCGGcCACCGGCGCCGcGCUGGaggugccccaGUUCg -3' miRNA: 3'- -UGUU-GUGGUUGCGGUaCGACCg---------UAAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 69146 | 0.73 | 0.513849 |
Target: 5'- uCGACACCcGCGCgcUGCUGGCGggCg -3' miRNA: 3'- uGUUGUGGuUGCGguACGACCGUaaG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 53003 | 0.73 | 0.524676 |
Target: 5'- cCAcCACCGACGCCAUGaCcGGCAg-- -3' miRNA: 3'- uGUuGUGGUUGCGGUAC-GaCCGUaag -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 6536 | 0.73 | 0.529031 |
Target: 5'- cAUGACGCCGACgGCCGagcugauccuggaggUGCUGGCAg-- -3' miRNA: 3'- -UGUUGUGGUUG-CGGU---------------ACGACCGUaag -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 40857 | 0.73 | 0.535588 |
Target: 5'- ---uCugCAGCGCgGUGCUGGCGUc- -3' miRNA: 3'- uguuGugGUUGCGgUACGACCGUAag -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 28072 | 0.73 | 0.535588 |
Target: 5'- gGCugagguCGCCGACGCCGaGCUgcagcaGGCGUUCg -3' miRNA: 3'- -UGuu----GUGGUUGCGGUaCGA------CCGUAAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 68407 | 0.73 | 0.546579 |
Target: 5'- -uGAUGCCGugGCCGaGCUGGCGa-- -3' miRNA: 3'- ugUUGUGGUugCGGUaCGACCGUaag -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 8652 | 0.72 | 0.556532 |
Target: 5'- aGCcGCACCAucgguacGCGgUGUGCUGGCcgUCg -3' miRNA: 3'- -UGuUGUGGU-------UGCgGUACGACCGuaAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 8939 | 0.72 | 0.557641 |
Target: 5'- cACGACACCugccuGCGgCAugUGCUGGCGaUCc -3' miRNA: 3'- -UGUUGUGGu----UGCgGU--ACGACCGUaAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 57368 | 0.72 | 0.568765 |
Target: 5'- -gGACACCAcccgACGCCA-GCUGcGCAgcgUCa -3' miRNA: 3'- ugUUGUGGU----UGCGGUaCGAC-CGUa--AG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 18925 | 0.72 | 0.60243 |
Target: 5'- gACGGCGCgGGCGagAUGCUGGCGg-- -3' miRNA: 3'- -UGUUGUGgUUGCggUACGACCGUaag -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 20872 | 0.72 | 0.60243 |
Target: 5'- gGCAACGCCAGCGCCGcUGaucgcCUGGaggUCu -3' miRNA: 3'- -UGUUGUGGUUGCGGU-AC-----GACCguaAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 51970 | 0.71 | 0.625023 |
Target: 5'- cGCAGCACCAacGCGCCAaccagGGCggUCa -3' miRNA: 3'- -UGUUGUGGU--UGCGGUacga-CCGuaAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 39270 | 0.71 | 0.636335 |
Target: 5'- gGCAACGCCu-CGCCGUGUUcGGCc--- -3' miRNA: 3'- -UGUUGUGGuuGCGGUACGA-CCGuaag -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 66197 | 0.71 | 0.647642 |
Target: 5'- aGCAGCuuCGACGCCAcGCUGgGCAc-- -3' miRNA: 3'- -UGUUGugGUUGCGGUaCGAC-CGUaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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