miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19271 5' -51.7 NC_004685.1 + 27227 0.68 0.798973
Target:  5'- gGCAcCACCGACGCCGccaaggGCUgucgugGGCggUCa -3'
miRNA:   3'- -UGUuGUGGUUGCGGUa-----CGA------CCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 35908 0.7 0.703726
Target:  5'- gGCuuCAUCAACGCCAUG-UGG-AUUCg -3'
miRNA:   3'- -UGuuGUGGUUGCGGUACgACCgUAAG- -5'
19271 5' -51.7 NC_004685.1 + 53358 0.7 0.703726
Target:  5'- cGCGGCGCCgGugGCCGcggcgaUGCUGGCc--- -3'
miRNA:   3'- -UGUUGUGG-UugCGGU------ACGACCGuaag -5'
19271 5' -51.7 NC_004685.1 + 47615 0.7 0.725726
Target:  5'- gACGGCucCCAguGgGCCGUGCUcGGCGUUg -3'
miRNA:   3'- -UGUUGu-GGU--UgCGGUACGA-CCGUAAg -5'
19271 5' -51.7 NC_004685.1 + 48380 0.7 0.725726
Target:  5'- cGCAuCGCCucgccGCGCCAccacagcuguUGCUGGCAg-- -3'
miRNA:   3'- -UGUuGUGGu----UGCGGU----------ACGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 31993 0.69 0.757958
Target:  5'- aACAACACCGGCaaGCCGgagccGCUGGUc--- -3'
miRNA:   3'- -UGUUGUGGUUG--CGGUa----CGACCGuaag -5'
19271 5' -51.7 NC_004685.1 + 9211 0.69 0.768446
Target:  5'- gGCGACcCCGACGCCAaGgaGGCc--- -3'
miRNA:   3'- -UGUUGuGGUUGCGGUaCgaCCGuaag -5'
19271 5' -51.7 NC_004685.1 + 51899 0.68 0.798973
Target:  5'- cCAGCACCGugGCCugaGC-GGCAc-- -3'
miRNA:   3'- uGUUGUGGUugCGGua-CGaCCGUaag -5'
19271 5' -51.7 NC_004685.1 + 55474 0.68 0.798973
Target:  5'- gACGACACCGACaGCC--GCUuGGCGa-- -3'
miRNA:   3'- -UGUUGUGGUUG-CGGuaCGA-CCGUaag -5'
19271 5' -51.7 NC_004685.1 + 66197 0.71 0.647642
Target:  5'- aGCAGCuuCGACGCCAcGCUGgGCAc-- -3'
miRNA:   3'- -UGUUGugGUUGCGGUaCGAC-CGUaag -5'
19271 5' -51.7 NC_004685.1 + 39270 0.71 0.636335
Target:  5'- gGCAACGCCu-CGCCGUGUUcGGCc--- -3'
miRNA:   3'- -UGUUGUGGuuGCGGUACGA-CCGuaag -5'
19271 5' -51.7 NC_004685.1 + 51970 0.71 0.625023
Target:  5'- cGCAGCACCAacGCGCCAaccagGGCggUCa -3'
miRNA:   3'- -UGUUGUGGU--UGCGGUacga-CCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 18379 0.74 0.471527
Target:  5'- -aGACACCGACGCugaCAUGCUGaUAUUCg -3'
miRNA:   3'- ugUUGUGGUUGCG---GUACGACcGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 53003 0.73 0.524676
Target:  5'- cCAcCACCGACGCCAUGaCcGGCAg-- -3'
miRNA:   3'- uGUuGUGGUUGCGGUAC-GaCCGUaag -5'
19271 5' -51.7 NC_004685.1 + 28072 0.73 0.535588
Target:  5'- gGCugagguCGCCGACGCCGaGCUgcagcaGGCGUUCg -3'
miRNA:   3'- -UGuu----GUGGUUGCGGUaCGA------CCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 8652 0.72 0.556532
Target:  5'- aGCcGCACCAucgguacGCGgUGUGCUGGCcgUCg -3'
miRNA:   3'- -UGuUGUGGU-------UGCgGUACGACCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 8939 0.72 0.557641
Target:  5'- cACGACACCugccuGCGgCAugUGCUGGCGaUCc -3'
miRNA:   3'- -UGUUGUGGu----UGCgGU--ACGACCGUaAG- -5'
19271 5' -51.7 NC_004685.1 + 57368 0.72 0.568765
Target:  5'- -gGACACCAcccgACGCCA-GCUGcGCAgcgUCa -3'
miRNA:   3'- ugUUGUGGU----UGCGGUaCGAC-CGUa--AG- -5'
19271 5' -51.7 NC_004685.1 + 20872 0.72 0.60243
Target:  5'- gGCAACGCCAGCGCCGcUGaucgcCUGGaggUCu -3'
miRNA:   3'- -UGUUGUGGUUGCGGU-AC-----GACCguaAG- -5'
19271 5' -51.7 NC_004685.1 + 18925 0.72 0.60243
Target:  5'- gACGGCGCgGGCGagAUGCUGGCGg-- -3'
miRNA:   3'- -UGUUGUGgUUGCggUACGACCGUaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.