miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19271 5' -51.7 NC_004685.1 + 31802 0.66 0.908622
Target:  5'- cACGACgACCGucuCGCCGacgcgGCUGGCu--- -3'
miRNA:   3'- -UGUUG-UGGUu--GCGGUa----CGACCGuaag -5'
19271 5' -51.7 NC_004685.1 + 66805 0.68 0.827844
Target:  5'- cCGAUccugGCCAGCGCCGUGCgcaccGGCc--- -3'
miRNA:   3'- uGUUG----UGGUUGCGGUACGa----CCGuaag -5'
19271 5' -51.7 NC_004685.1 + 3618 0.68 0.827844
Target:  5'- gGCGGCACCAACGaCCGcccgcuUGCcuacgugGGCAUc- -3'
miRNA:   3'- -UGUUGUGGUUGC-GGU------ACGa------CCGUAag -5'
19271 5' -51.7 NC_004685.1 + 67129 1.09 0.002438
Target:  5'- gACAACACCAACGCCAUGCUGGCAUUCc -3'
miRNA:   3'- -UGUUGUGGUUGCGGUACGACCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 58153 0.66 0.894604
Target:  5'- cGCAGCGCCGACGC-AUGagcGCcgUCu -3'
miRNA:   3'- -UGUUGUGGUUGCGgUACgacCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 67302 0.66 0.887173
Target:  5'- cGCGcCGCCAA-GCuCGUGCUGGCc--- -3'
miRNA:   3'- -UGUuGUGGUUgCG-GUACGACCGuaag -5'
19271 5' -51.7 NC_004685.1 + 53553 0.66 0.879466
Target:  5'- cGCGGCcgacuccaggggACCGugGCCGUGCgcgucGGCGg-- -3'
miRNA:   3'- -UGUUG------------UGGUugCGGUACGa----CCGUaag -5'
19271 5' -51.7 NC_004685.1 + 9134 0.66 0.879466
Target:  5'- aGCAacuGCAUCAACGCC-UGCUGcaGCGg-- -3'
miRNA:   3'- -UGU---UGUGGUUGCGGuACGAC--CGUaag -5'
19271 5' -51.7 NC_004685.1 + 29203 0.67 0.863253
Target:  5'- aGCAGCGCCugaaucugcggcAGCGCCAgGUUcGGCGUcCa -3'
miRNA:   3'- -UGUUGUGG------------UUGCGGUaCGA-CCGUAaG- -5'
19271 5' -51.7 NC_004685.1 + 1077 0.67 0.837047
Target:  5'- gGCAAUgguuagACCAuuGgGCCGgccgGCUGGUGUUCg -3'
miRNA:   3'- -UGUUG------UGGU--UgCGGUa---CGACCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 60248 0.67 0.846023
Target:  5'- gGCGGCACCAGCGacaaCGcGCgGGCGa-- -3'
miRNA:   3'- -UGUUGUGGUUGCg---GUaCGaCCGUaag -5'
19271 5' -51.7 NC_004685.1 + 23739 0.66 0.879466
Target:  5'- uGCucCACCAGCgucGCCGUGUcgGGCAggUCc -3'
miRNA:   3'- -UGuuGUGGUUG---CGGUACGa-CCGUa-AG- -5'
19271 5' -51.7 NC_004685.1 + 55318 0.66 0.901053
Target:  5'- uCGACACCAcgggggUGCgGUGCgggcacgacggguUGGCGUUCa -3'
miRNA:   3'- uGUUGUGGUu-----GCGgUACG-------------ACCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 14406 0.67 0.846023
Target:  5'- uGCAGCGgCAGCGUCA-GCUGcGCGc-- -3'
miRNA:   3'- -UGUUGUgGUUGCGGUaCGAC-CGUaag -5'
19271 5' -51.7 NC_004685.1 + 39421 0.66 0.894604
Target:  5'- uCGGCGCC-GCGCCA-GgaGGCAg-- -3'
miRNA:   3'- uGUUGUGGuUGCGGUaCgaCCGUaag -5'
19271 5' -51.7 NC_004685.1 + 12021 0.66 0.879466
Target:  5'- -gGACGCCAACGCCGacgugaaGCUcGCggUCa -3'
miRNA:   3'- ugUUGUGGUUGCGGUa------CGAcCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 48332 0.67 0.837047
Target:  5'- cCAGauCGCCGACGCCAcguUGUcggcggUGGCAUUg -3'
miRNA:   3'- uGUU--GUGGUUGCGGU---ACG------ACCGUAAg -5'
19271 5' -51.7 NC_004685.1 + 69349 0.68 0.827844
Target:  5'- uCGACcCCGGCGUCAUGUUGaGCGg-- -3'
miRNA:   3'- uGUUGuGGUUGCGGUACGAC-CGUaag -5'
19271 5' -51.7 NC_004685.1 + 10140 0.66 0.894604
Target:  5'- uGCGAC-CCGACGg---GCUGGCAggCa -3'
miRNA:   3'- -UGUUGuGGUUGCgguaCGACCGUaaG- -5'
19271 5' -51.7 NC_004685.1 + 18940 0.66 0.887173
Target:  5'- -gAugGCC-GCGCUGUGCcUGGCGcUCg -3'
miRNA:   3'- ugUugUGGuUGCGGUACG-ACCGUaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.