miRNA display CGI


Results 21 - 40 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19271 5' -51.7 NC_004685.1 + 6350 0.71 0.657807
Target:  5'- uGCGACGCCGAaaucgucCGCUAccGCUGGCAg-- -3'
miRNA:   3'- -UGUUGUGGUU-------GCGGUa-CGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 3684 0.71 0.658935
Target:  5'- cGCGACGCCGACgGCUcgGCgcgGGUGUaUCg -3'
miRNA:   3'- -UGUUGUGGUUG-CGGuaCGa--CCGUA-AG- -5'
19271 5' -51.7 NC_004685.1 + 11796 0.7 0.700398
Target:  5'- cGCGGCGCauggucgaagaguuCAACGCCAagGC-GGCGUUCu -3'
miRNA:   3'- -UGUUGUG--------------GUUGCGGUa-CGaCCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 35908 0.7 0.703726
Target:  5'- gGCuuCAUCAACGCCAUG-UGG-AUUCg -3'
miRNA:   3'- -UGuuGUGGUUGCGGUACgACCgUAAG- -5'
19271 5' -51.7 NC_004685.1 + 53358 0.7 0.703726
Target:  5'- cGCGGCGCCgGugGCCGcggcgaUGCUGGCc--- -3'
miRNA:   3'- -UGUUGUGG-UugCGGU------ACGACCGuaag -5'
19271 5' -51.7 NC_004685.1 + 11357 0.7 0.703726
Target:  5'- cCGACACCGAgGCUGUGCcGGCc--- -3'
miRNA:   3'- uGUUGUGGUUgCGGUACGaCCGuaag -5'
19271 5' -51.7 NC_004685.1 + 48377 0.7 0.703726
Target:  5'- gACAGCGCCgGugGagGUGCUGGCGa-- -3'
miRNA:   3'- -UGUUGUGG-UugCggUACGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 27058 0.7 0.714769
Target:  5'- cCAGauCACCAGCccacCCAUGCUGGCGg-- -3'
miRNA:   3'- uGUU--GUGGUUGc---GGUACGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 48380 0.7 0.725726
Target:  5'- cGCAuCGCCucgccGCGCCAccacagcuguUGCUGGCAg-- -3'
miRNA:   3'- -UGUuGUGGu----UGCGGU----------ACGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 65502 0.7 0.725726
Target:  5'- uCGGCAcCCAACugGCCGaGCUGGCGggcgUCg -3'
miRNA:   3'- uGUUGU-GGUUG--CGGUaCGACCGUa---AG- -5'
19271 5' -51.7 NC_004685.1 + 47615 0.7 0.725726
Target:  5'- gACGGCucCCAguGgGCCGUGCUcGGCGUUg -3'
miRNA:   3'- -UGUUGu-GGU--UgCGGUACGA-CCGUAAg -5'
19271 5' -51.7 NC_004685.1 + 57723 0.7 0.725726
Target:  5'- gUAAC-CCGACGCCGcGCUGcGUcgUCg -3'
miRNA:   3'- uGUUGuGGUUGCGGUaCGAC-CGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 50234 0.7 0.725726
Target:  5'- cCGAcCGCCGacGCGCCAcGCacGGCGUUCg -3'
miRNA:   3'- uGUU-GUGGU--UGCGGUaCGa-CCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 3733 0.69 0.736585
Target:  5'- cGCAGCGCC-ACGUCAcGCUGGgCGa-- -3'
miRNA:   3'- -UGUUGUGGuUGCGGUaCGACC-GUaag -5'
19271 5' -51.7 NC_004685.1 + 16568 0.69 0.747333
Target:  5'- aGCGACGaCGGCGgCGUGCUGGUcaUCc -3'
miRNA:   3'- -UGUUGUgGUUGCgGUACGACCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 31993 0.69 0.757958
Target:  5'- aACAACACCGGCaaGCCGgagccGCUGGUc--- -3'
miRNA:   3'- -UGUUGUGGUUG--CGGUa----CGACCGuaag -5'
19271 5' -51.7 NC_004685.1 + 9211 0.69 0.768446
Target:  5'- gGCGACcCCGACGCCAaGgaGGCc--- -3'
miRNA:   3'- -UGUUGuGGUUGCGGUaCgaCCGuaag -5'
19271 5' -51.7 NC_004685.1 + 23049 0.69 0.778786
Target:  5'- uACAGCGCCGcgccCGCCAUGUgaaGGUAg-- -3'
miRNA:   3'- -UGUUGUGGUu---GCGGUACGa--CCGUaag -5'
19271 5' -51.7 NC_004685.1 + 55474 0.68 0.798973
Target:  5'- gACGACACCGACaGCC--GCUuGGCGa-- -3'
miRNA:   3'- -UGUUGUGGUUG-CGGuaCGA-CCGUaag -5'
19271 5' -51.7 NC_004685.1 + 27227 0.68 0.798973
Target:  5'- gGCAcCACCGACGCCGccaaggGCUgucgugGGCggUCa -3'
miRNA:   3'- -UGUuGUGGUUGCGGUa-----CGA------CCGuaAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.