Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19275 | 5' | -58.1 | NC_004685.1 | + | 1072 | 0.72 | 0.284596 |
Target: 5'- gGUGuuGCCCGcGCAGUCcugcgggcggaugcGGGGCAUCa -3' miRNA: 3'- -CACgcCGGGCaCGUUAG--------------UCCCGUAGc -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 1241 | 0.66 | 0.57599 |
Target: 5'- gGUGCacguGCCCGaUGUcggauccggcuAcgCAGGGCAUCGc -3' miRNA: 3'- -CACGc---CGGGC-ACG-----------UuaGUCCCGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 1914 | 0.67 | 0.554896 |
Target: 5'- cUGCGGCCgCGguugGCG-UCAGcGGCGaCGg -3' miRNA: 3'- cACGCCGG-GCa---CGUuAGUC-CCGUaGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 3999 | 0.66 | 0.586606 |
Target: 5'- -aGcCGGCCCgGUGUAGUCGacGGGCuggccuUCGc -3' miRNA: 3'- caC-GCCGGG-CACGUUAGU--CCCGu-----AGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 4709 | 0.69 | 0.407226 |
Target: 5'- uGUGCGGCUac-GCGAUCaucccggccgaGGGGCAUCc -3' miRNA: 3'- -CACGCCGGgcaCGUUAG-----------UCCCGUAGc -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 7792 | 0.7 | 0.398261 |
Target: 5'- -cGaCGGCCUGUgGCAcUCGGGGCcgGUCa -3' miRNA: 3'- caC-GCCGGGCA-CGUuAGUCCCG--UAGc -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 9470 | 0.66 | 0.586606 |
Target: 5'- -cGCuGCCCGcGauuGUCGGcGGCGUCGg -3' miRNA: 3'- caCGcCGGGCaCgu-UAGUC-CCGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 12769 | 0.68 | 0.483229 |
Target: 5'- -aGCGGCUCacacaGUGCAcGUCAGGcCAUCGc -3' miRNA: 3'- caCGCCGGG-----CACGU-UAGUCCcGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 14720 | 0.72 | 0.303931 |
Target: 5'- -cGCGGCCCGUGCGcuggagccggcacugGUCgaAGcGGcCAUCGa -3' miRNA: 3'- caCGCCGGGCACGU---------------UAG--UC-CC-GUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 15021 | 0.68 | 0.483229 |
Target: 5'- uGUGauGCCCuaaguugcaguaGUGCAGUaguguGGGGCAUCGu -3' miRNA: 3'- -CACgcCGGG------------CACGUUAg----UCCCGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 18116 | 0.67 | 0.534034 |
Target: 5'- --aCGGCCCGUcCGAguUCAGGGCggUGg -3' miRNA: 3'- cacGCCGGGCAcGUU--AGUCCCGuaGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 18353 | 0.69 | 0.416317 |
Target: 5'- aUGCGGCCgGUgGCGAUgAGGugacgaucaGCGUCGc -3' miRNA: 3'- cACGCCGGgCA-CGUUAgUCC---------CGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 18652 | 0.69 | 0.453882 |
Target: 5'- uGUGCGGcCCCGguccugacGCAgAUCAGGGCu--- -3' miRNA: 3'- -CACGCC-GGGCa-------CGU-UAGUCCCGuagc -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 20913 | 0.66 | 0.615428 |
Target: 5'- -cGCGGCcgaccaucagaagaCCG-GCGAccuUCAGGGUGUCa -3' miRNA: 3'- caCGCCG--------------GGCaCGUU---AGUCCCGUAGc -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 21461 | 0.73 | 0.253277 |
Target: 5'- -gGCGGCCgGUGUucgaCAcGGGCGUCGa -3' miRNA: 3'- caCGCCGGgCACGuua-GU-CCCGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 22339 | 0.76 | 0.150507 |
Target: 5'- -gGCGGCUgGUGgAccggcgaguAUCAGGGCAUCGa -3' miRNA: 3'- caCGCCGGgCACgU---------UAGUCCCGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 24400 | 0.68 | 0.497233 |
Target: 5'- -cGCGGCCCcgacaccaacauCAGUCcguGGGCAUCGg -3' miRNA: 3'- caCGCCGGGcac---------GUUAGu--CCCGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 24917 | 0.66 | 0.57599 |
Target: 5'- -cGCaGGCCCGcGCGGUgucGGCGUCGg -3' miRNA: 3'- caCG-CCGGGCaCGUUAgucCCGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 25870 | 0.77 | 0.131519 |
Target: 5'- -aGCGGCCCGcGCAgGUCGGGGCGg-- -3' miRNA: 3'- caCGCCGGGCaCGU-UAGUCCCGUagc -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 32367 | 0.66 | 0.61864 |
Target: 5'- -gGUGGCCg--GCAucaccgcgCAGGGCAUCa -3' miRNA: 3'- caCGCCGGgcaCGUua------GUCCCGUAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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