Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19275 | 5' | -58.1 | NC_004685.1 | + | 22339 | 0.76 | 0.150507 |
Target: 5'- -gGCGGCUgGUGgAccggcgaguAUCAGGGCAUCGa -3' miRNA: 3'- caCGCCGGgCACgU---------UAGUCCCGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 32367 | 0.66 | 0.61864 |
Target: 5'- -gGUGGCCg--GCAucaccgcgCAGGGCAUCa -3' miRNA: 3'- caCGCCGGgcaCGUua------GUCCCGUAGc -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 20913 | 0.66 | 0.615428 |
Target: 5'- -cGCGGCcgaccaucagaagaCCG-GCGAccuUCAGGGUGUCa -3' miRNA: 3'- caCGCCG--------------GGCaCGUU---AGUCCCGUAGc -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 68558 | 0.66 | 0.597259 |
Target: 5'- aUGCGGgcgcCCCGaUGC-GUCGGGGUGuUCGg -3' miRNA: 3'- cACGCC----GGGC-ACGuUAGUCCCGU-AGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 64861 | 0.66 | 0.586606 |
Target: 5'- cGUGC-GCCgaagguaguCGUucagGCGAUCaAGGGCAUCGg -3' miRNA: 3'- -CACGcCGG---------GCA----CGUUAG-UCCCGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 9470 | 0.66 | 0.586606 |
Target: 5'- -cGCuGCCCGcGauuGUCGGcGGCGUCGg -3' miRNA: 3'- caCGcCGGGCaCgu-UAGUC-CCGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 3999 | 0.66 | 0.586606 |
Target: 5'- -aGcCGGCCCgGUGUAGUCGacGGGCuggccuUCGc -3' miRNA: 3'- caC-GCCGGG-CACGUUAGU--CCCGu-----AGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 48170 | 0.66 | 0.57599 |
Target: 5'- aUGUGGCCCG-GCucGUC-GGGCAg-- -3' miRNA: 3'- cACGCCGGGCaCGu-UAGuCCCGUagc -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 1241 | 0.66 | 0.57599 |
Target: 5'- gGUGCacguGCCCGaUGUcggauccggcuAcgCAGGGCAUCGc -3' miRNA: 3'- -CACGc---CGGGC-ACG-----------UuaGUCCCGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 1914 | 0.67 | 0.554896 |
Target: 5'- cUGCGGCCgCGguugGCG-UCAGcGGCGaCGg -3' miRNA: 3'- cACGCCGG-GCa---CGUuAGUC-CCGUaGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 1072 | 0.72 | 0.284596 |
Target: 5'- gGUGuuGCCCGcGCAGUCcugcgggcggaugcGGGGCAUCa -3' miRNA: 3'- -CACgcCGGGCaCGUUAG--------------UCCCGUAGc -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 14720 | 0.72 | 0.303931 |
Target: 5'- -cGCGGCCCGUGCGcuggagccggcacugGUCgaAGcGGcCAUCGa -3' miRNA: 3'- caCGCCGGGCACGU---------------UAG--UC-CC-GUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 56161 | 0.71 | 0.32349 |
Target: 5'- -cGCGGUCgGUGCcucGUCGGGGCGguccCGg -3' miRNA: 3'- caCGCCGGgCACGu--UAGUCCCGUa---GC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 36787 | 0.7 | 0.398261 |
Target: 5'- -gGCGGCCCGaGCcg-CAGGGCuggugCGu -3' miRNA: 3'- caCGCCGGGCaCGuuaGUCCCGua---GC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 58321 | 0.69 | 0.407226 |
Target: 5'- -gGuCGGCCCGgccgGCAcagccucgguGUCGGGGCggGUCGc -3' miRNA: 3'- caC-GCCGGGCa---CGU----------UAGUCCCG--UAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 15021 | 0.68 | 0.483229 |
Target: 5'- uGUGauGCCCuaaguugcaguaGUGCAGUaguguGGGGCAUCGu -3' miRNA: 3'- -CACgcCGGG------------CACGUUAg----UCCCGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 24400 | 0.68 | 0.497233 |
Target: 5'- -cGCGGCCCcgacaccaacauCAGUCcguGGGCAUCGg -3' miRNA: 3'- caCGCCGGGcac---------GUUAGu--CCCGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 66256 | 1.09 | 0.000663 |
Target: 5'- uGUGCGGCCCGUGCAAUCAGGGCAUCGg -3' miRNA: 3'- -CACGCCGGGCACGUUAGUCCCGUAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 68341 | 0.66 | 0.629352 |
Target: 5'- cUGCucCCCcagGCAAUCAGGGCuUCGc -3' miRNA: 3'- cACGccGGGca-CGUUAGUCCCGuAGC- -5' |
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19275 | 5' | -58.1 | NC_004685.1 | + | 24917 | 0.66 | 0.57599 |
Target: 5'- -cGCaGGCCCGcGCGGUgucGGCGUCGg -3' miRNA: 3'- caCG-CCGGGCaCGUUAgucCCGUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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