Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19276 | 3' | -58.9 | NC_004685.1 | + | 12814 | 0.68 | 0.47799 |
Target: 5'- cUGGCGGGCcgUGCCGucgacaagaAGGUUGUCGcGAc -3' miRNA: 3'- aGCCGUUCGa-GCGGC---------UCCAGCAGC-CU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 12642 | 0.68 | 0.487723 |
Target: 5'- cCGGCu-GCUCGCCGccgggcGGGUCaaggugaagGUCGGc -3' miRNA: 3'- aGCCGuuCGAGCGGC------UCCAG---------CAGCCu -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 33428 | 0.67 | 0.517459 |
Target: 5'- cCGGCcuGCUCGCCGAcaUCuUCGGc -3' miRNA: 3'- aGCCGuuCGAGCGGCUccAGcAGCCu -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 54055 | 0.67 | 0.517459 |
Target: 5'- -gGGCGauGGCUCGCCGucG-CGacUCGGAg -3' miRNA: 3'- agCCGU--UCGAGCGGCucCaGC--AGCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 53931 | 0.67 | 0.527533 |
Target: 5'- gUGGCGAGCUgGCCac-GUCGUCGu- -3' miRNA: 3'- aGCCGUUCGAgCGGcucCAGCAGCcu -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 14210 | 0.67 | 0.53768 |
Target: 5'- gUCGcCAAGCggcUGUCGGuGUCGUCGGAg -3' miRNA: 3'- -AGCcGUUCGa--GCGGCUcCAGCAGCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 55782 | 0.67 | 0.53768 |
Target: 5'- cUUGGuCAGGCUCGCCucGGUgcggaCGUUGGc -3' miRNA: 3'- -AGCC-GUUCGAGCGGcuCCA-----GCAGCCu -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 14707 | 0.67 | 0.544822 |
Target: 5'- -gGGCAAGCUgcacgccgacacggUGaCCGAGGU-GUCGGu -3' miRNA: 3'- agCCGUUCGA--------------GC-GGCUCCAgCAGCCu -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 19695 | 0.67 | 0.547892 |
Target: 5'- gCGGCcguGGCggGCCGAGG-CGuUCGGc -3' miRNA: 3'- aGCCGu--UCGagCGGCUCCaGC-AGCCu -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 17263 | 0.67 | 0.547892 |
Target: 5'- cCGGCAucAGCUgGa--GGGUCGUCGGc -3' miRNA: 3'- aGCCGU--UCGAgCggcUCCAGCAGCCu -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 62461 | 0.67 | 0.568492 |
Target: 5'- cUCGGCGaucAGCUCGUCaAGcUgGUCGGGu -3' miRNA: 3'- -AGCCGU---UCGAGCGGcUCcAgCAGCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 29052 | 0.67 | 0.568492 |
Target: 5'- gUCGcGCAGauGCUCGCCGAacuucaccaGGUCGUagaUGGu -3' miRNA: 3'- -AGC-CGUU--CGAGCGGCU---------CCAGCA---GCCu -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 53374 | 0.67 | 0.568492 |
Target: 5'- gCGGCGAuGCUgGCC-AGcUCGUCGGc -3' miRNA: 3'- aGCCGUU-CGAgCGGcUCcAGCAGCCu -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 31755 | 0.66 | 0.577826 |
Target: 5'- cCGGCcAGCUccgaccacccgccCGCUGGGGUgGaCGGAc -3' miRNA: 3'- aGCCGuUCGA-------------GCGGCUCCAgCaGCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 61451 | 0.66 | 0.578866 |
Target: 5'- -gGGC-AGCgUCGCCGuAGccgacgcuguuGUCGUCGGGc -3' miRNA: 3'- agCCGuUCG-AGCGGC-UC-----------CAGCAGCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 2342 | 0.66 | 0.578866 |
Target: 5'- gCGGCGcaCgUCGCCGAGGUUGggcacccCGGGc -3' miRNA: 3'- aGCCGUucG-AGCGGCUCCAGCa------GCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 53863 | 0.66 | 0.588237 |
Target: 5'- uUCGuaGGGCUUGCCGuccgcGGGUCaguggucagcgagGUCGGGc -3' miRNA: 3'- -AGCcgUUCGAGCGGC-----UCCAG-------------CAGCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 59697 | 0.66 | 0.58928 |
Target: 5'- gUCGaGCAu-CUUGUCGGGGUCcUCGGGu -3' miRNA: 3'- -AGC-CGUucGAGCGGCUCCAGcAGCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 59461 | 0.66 | 0.58928 |
Target: 5'- aCGGUcAGCUCGCCGuuggacagcucGGG-CGgcggCGGGu -3' miRNA: 3'- aGCCGuUCGAGCGGC-----------UCCaGCa---GCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 54081 | 0.66 | 0.58928 |
Target: 5'- aUGuCAGGgUCGCCGGGGUUGUagucgaCGGGg -3' miRNA: 3'- aGCcGUUCgAGCGGCUCCAGCA------GCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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