miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19276 3' -58.9 NC_004685.1 + 32510 0.7 0.396035
Target:  5'- gCGGCAAGCUCgGCCaGGGcgcgaaccuucccggCGUCGGc -3'
miRNA:   3'- aGCCGUUCGAG-CGGcUCCa--------------GCAGCCu -5'
19276 3' -58.9 NC_004685.1 + 33081 0.7 0.386548
Target:  5'- gCGGCGAGCgcaccCGCC-AGGUCcUCGGc -3'
miRNA:   3'- aGCCGUUCGa----GCGGcUCCAGcAGCCu -5'
19276 3' -58.9 NC_004685.1 + 33428 0.67 0.517459
Target:  5'- cCGGCcuGCUCGCCGAcaUCuUCGGc -3'
miRNA:   3'- aGCCGuuCGAGCGGCUccAGcAGCCu -5'
19276 3' -58.9 NC_004685.1 + 34671 0.72 0.300216
Target:  5'- cCGGCGAGUUCGgCGAGGaCGUgauuucgcUGGAg -3'
miRNA:   3'- aGCCGUUCGAGCgGCUCCaGCA--------GCCU- -5'
19276 3' -58.9 NC_004685.1 + 35112 0.7 0.395166
Target:  5'- cUCGGC-AGCgUCgGCCGcGGUCaUCGGAu -3'
miRNA:   3'- -AGCCGuUCG-AG-CGGCuCCAGcAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 37692 0.66 0.610198
Target:  5'- gCGGCuccGGCUUGCCGGuGUUGUUGa- -3'
miRNA:   3'- aGCCGu--UCGAGCGGCUcCAGCAGCcu -5'
19276 3' -58.9 NC_004685.1 + 37888 0.66 0.611246
Target:  5'- gUCGGCGAgacggucgucgugucGCUCGguCCGuccacccagcgggcGGGUgGUCGGAg -3'
miRNA:   3'- -AGCCGUU---------------CGAGC--GGC--------------UCCAgCAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 41777 0.66 0.59868
Target:  5'- uUUGGUggGgUCGCCcaccaucGAGGUCGgccCGGu -3'
miRNA:   3'- -AGCCGuuCgAGCGG-------CUCCAGCa--GCCu -5'
19276 3' -58.9 NC_004685.1 + 42699 0.66 0.610198
Target:  5'- gUCGGCAGGCagCGCCu-GGUgGUCu-- -3'
miRNA:   3'- -AGCCGUUCGa-GCGGcuCCAgCAGccu -5'
19276 3' -58.9 NC_004685.1 + 43061 0.75 0.197276
Target:  5'- gCGGCGGuGCUCGCCGcGGUCGgcuGGGc -3'
miRNA:   3'- aGCCGUU-CGAGCGGCuCCAGCag-CCU- -5'
19276 3' -58.9 NC_004685.1 + 43346 0.69 0.443779
Target:  5'- cUCGGCcaucgccucgucgcuGAGCaUC-CCGAGGUCGgggugCGGGg -3'
miRNA:   3'- -AGCCG---------------UUCG-AGcGGCUCCAGCa----GCCU- -5'
19276 3' -58.9 NC_004685.1 + 44651 0.66 0.59868
Target:  5'- gUGGUAguacagggggaucAGCUCGUcggaguCGGGGUUGUUGGGa -3'
miRNA:   3'- aGCCGU-------------UCGAGCG------GCUCCAGCAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 45739 0.66 0.610198
Target:  5'- aCGGCAgcGGgUCGCCGGGG-CGgcgCGu- -3'
miRNA:   3'- aGCCGU--UCgAGCGGCUCCaGCa--GCcu -5'
19276 3' -58.9 NC_004685.1 + 48676 0.69 0.421752
Target:  5'- gCGGCAAGg-UGCCGAGaGUCGacaccagCGGAc -3'
miRNA:   3'- aGCCGUUCgaGCGGCUC-CAGCa------GCCU- -5'
19276 3' -58.9 NC_004685.1 + 49608 0.69 0.41277
Target:  5'- -aGGCGGGCUgGCCGAcgaacgccaGGUgGUCGaGGa -3'
miRNA:   3'- agCCGUUCGAgCGGCU---------CCAgCAGC-CU- -5'
19276 3' -58.9 NC_004685.1 + 52704 0.69 0.403908
Target:  5'- gCGGCAGGUcugcccacccUCGCCGGccGGgcaGUCGGGu -3'
miRNA:   3'- aGCCGUUCG----------AGCGGCU--CCag-CAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 53374 0.67 0.568492
Target:  5'- gCGGCGAuGCUgGCC-AGcUCGUCGGc -3'
miRNA:   3'- aGCCGUU-CGAgCGGcUCcAGCAGCCu -5'
19276 3' -58.9 NC_004685.1 + 53863 0.66 0.588237
Target:  5'- uUCGuaGGGCUUGCCGuccgcGGGUCaguggucagcgagGUCGGGc -3'
miRNA:   3'- -AGCcgUUCGAGCGGC-----UCCAG-------------CAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 53931 0.67 0.527533
Target:  5'- gUGGCGAGCUgGCCac-GUCGUCGu- -3'
miRNA:   3'- aGCCGUUCGAgCGGcucCAGCAGCcu -5'
19276 3' -58.9 NC_004685.1 + 54055 0.67 0.517459
Target:  5'- -gGGCGauGGCUCGCCGucG-CGacUCGGAg -3'
miRNA:   3'- agCCGU--UCGAGCGGCucCaGC--AGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.