miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19276 3' -58.9 NC_004685.1 + 12814 0.68 0.47799
Target:  5'- cUGGCGGGCcgUGCCGucgacaagaAGGUUGUCGcGAc -3'
miRNA:   3'- aGCCGUUCGa-GCGGC---------UCCAGCAGC-CU- -5'
19276 3' -58.9 NC_004685.1 + 12642 0.68 0.487723
Target:  5'- cCGGCu-GCUCGCCGccgggcGGGUCaaggugaagGUCGGc -3'
miRNA:   3'- aGCCGuuCGAGCGGC------UCCAG---------CAGCCu -5'
19276 3' -58.9 NC_004685.1 + 33428 0.67 0.517459
Target:  5'- cCGGCcuGCUCGCCGAcaUCuUCGGc -3'
miRNA:   3'- aGCCGuuCGAGCGGCUccAGcAGCCu -5'
19276 3' -58.9 NC_004685.1 + 54055 0.67 0.517459
Target:  5'- -gGGCGauGGCUCGCCGucG-CGacUCGGAg -3'
miRNA:   3'- agCCGU--UCGAGCGGCucCaGC--AGCCU- -5'
19276 3' -58.9 NC_004685.1 + 53931 0.67 0.527533
Target:  5'- gUGGCGAGCUgGCCac-GUCGUCGu- -3'
miRNA:   3'- aGCCGUUCGAgCGGcucCAGCAGCcu -5'
19276 3' -58.9 NC_004685.1 + 14210 0.67 0.53768
Target:  5'- gUCGcCAAGCggcUGUCGGuGUCGUCGGAg -3'
miRNA:   3'- -AGCcGUUCGa--GCGGCUcCAGCAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 55782 0.67 0.53768
Target:  5'- cUUGGuCAGGCUCGCCucGGUgcggaCGUUGGc -3'
miRNA:   3'- -AGCC-GUUCGAGCGGcuCCA-----GCAGCCu -5'
19276 3' -58.9 NC_004685.1 + 14707 0.67 0.544822
Target:  5'- -gGGCAAGCUgcacgccgacacggUGaCCGAGGU-GUCGGu -3'
miRNA:   3'- agCCGUUCGA--------------GC-GGCUCCAgCAGCCu -5'
19276 3' -58.9 NC_004685.1 + 19695 0.67 0.547892
Target:  5'- gCGGCcguGGCggGCCGAGG-CGuUCGGc -3'
miRNA:   3'- aGCCGu--UCGagCGGCUCCaGC-AGCCu -5'
19276 3' -58.9 NC_004685.1 + 17263 0.67 0.547892
Target:  5'- cCGGCAucAGCUgGa--GGGUCGUCGGc -3'
miRNA:   3'- aGCCGU--UCGAgCggcUCCAGCAGCCu -5'
19276 3' -58.9 NC_004685.1 + 62461 0.67 0.568492
Target:  5'- cUCGGCGaucAGCUCGUCaAGcUgGUCGGGu -3'
miRNA:   3'- -AGCCGU---UCGAGCGGcUCcAgCAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 29052 0.67 0.568492
Target:  5'- gUCGcGCAGauGCUCGCCGAacuucaccaGGUCGUagaUGGu -3'
miRNA:   3'- -AGC-CGUU--CGAGCGGCU---------CCAGCA---GCCu -5'
19276 3' -58.9 NC_004685.1 + 53374 0.67 0.568492
Target:  5'- gCGGCGAuGCUgGCC-AGcUCGUCGGc -3'
miRNA:   3'- aGCCGUU-CGAgCGGcUCcAGCAGCCu -5'
19276 3' -58.9 NC_004685.1 + 31755 0.66 0.577826
Target:  5'- cCGGCcAGCUccgaccacccgccCGCUGGGGUgGaCGGAc -3'
miRNA:   3'- aGCCGuUCGA-------------GCGGCUCCAgCaGCCU- -5'
19276 3' -58.9 NC_004685.1 + 61451 0.66 0.578866
Target:  5'- -gGGC-AGCgUCGCCGuAGccgacgcuguuGUCGUCGGGc -3'
miRNA:   3'- agCCGuUCG-AGCGGC-UC-----------CAGCAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 2342 0.66 0.578866
Target:  5'- gCGGCGcaCgUCGCCGAGGUUGggcacccCGGGc -3'
miRNA:   3'- aGCCGUucG-AGCGGCUCCAGCa------GCCU- -5'
19276 3' -58.9 NC_004685.1 + 53863 0.66 0.588237
Target:  5'- uUCGuaGGGCUUGCCGuccgcGGGUCaguggucagcgagGUCGGGc -3'
miRNA:   3'- -AGCcgUUCGAGCGGC-----UCCAG-------------CAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 59697 0.66 0.58928
Target:  5'- gUCGaGCAu-CUUGUCGGGGUCcUCGGGu -3'
miRNA:   3'- -AGC-CGUucGAGCGGCUCCAGcAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 59461 0.66 0.58928
Target:  5'- aCGGUcAGCUCGCCGuuggacagcucGGG-CGgcggCGGGu -3'
miRNA:   3'- aGCCGuUCGAGCGGC-----------UCCaGCa---GCCU- -5'
19276 3' -58.9 NC_004685.1 + 54081 0.66 0.58928
Target:  5'- aUGuCAGGgUCGCCGGGGUUGUagucgaCGGGg -3'
miRNA:   3'- aGCcGUUCgAGCGGCUCCAGCA------GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.