Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19276 | 3' | -58.9 | NC_004685.1 | + | 68955 | 0.72 | 0.272737 |
Target: 5'- gUCGGCAccucGGCUCGCac-GG-CGUCGGGa -3' miRNA: 3'- -AGCCGU----UCGAGCGgcuCCaGCAGCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 66369 | 0.66 | 0.610198 |
Target: 5'- aUCGGCcAGUUUGCCGucGUCGaCGa- -3' miRNA: 3'- -AGCCGuUCGAGCGGCucCAGCaGCcu -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 65534 | 1.09 | 0.000669 |
Target: 5'- gUCGGCAAGCUCGCCGAGGUCGUCGGAg -3' miRNA: 3'- -AGCCGUUCGAGCGGCUCCAGCAGCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 65517 | 0.69 | 0.430851 |
Target: 5'- -gGGCAGGCUCgGCCG-GGUgGUuucgacgcCGGAc -3' miRNA: 3'- agCCGUUCGAG-CGGCuCCAgCA--------GCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 63091 | 0.71 | 0.307411 |
Target: 5'- gUCGuCAGGUUCGCUGGGGUCGcgcucgUCGGu -3' miRNA: 3'- -AGCcGUUCGAGCGGCUCCAGC------AGCCu -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 62461 | 0.67 | 0.568492 |
Target: 5'- cUCGGCGaucAGCUCGUCaAGcUgGUCGGGu -3' miRNA: 3'- -AGCCGU---UCGAGCGGcUCcAgCAGCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 61451 | 0.66 | 0.578866 |
Target: 5'- -gGGC-AGCgUCGCCGuAGccgacgcuguuGUCGUCGGGc -3' miRNA: 3'- agCCGuUCG-AGCGGC-UC-----------CAGCAGCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 59697 | 0.66 | 0.58928 |
Target: 5'- gUCGaGCAu-CUUGUCGGGGUCcUCGGGu -3' miRNA: 3'- -AGC-CGUucGAGCGGCUCCAGcAGCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 59461 | 0.66 | 0.58928 |
Target: 5'- aCGGUcAGCUCGCCGuuggacagcucGGG-CGgcggCGGGu -3' miRNA: 3'- aGCCGuUCGAGCGGC-----------UCCaGCa---GCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 55782 | 0.67 | 0.53768 |
Target: 5'- cUUGGuCAGGCUCGCCucGGUgcggaCGUUGGc -3' miRNA: 3'- -AGCC-GUUCGAGCGGcuCCA-----GCAGCCu -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 54081 | 0.66 | 0.58928 |
Target: 5'- aUGuCAGGgUCGCCGGGGUUGUagucgaCGGGg -3' miRNA: 3'- aGCcGUUCgAGCGGCUCCAGCA------GCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 54055 | 0.67 | 0.517459 |
Target: 5'- -gGGCGauGGCUCGCCGucG-CGacUCGGAg -3' miRNA: 3'- agCCGU--UCGAGCGGCucCaGC--AGCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 53931 | 0.67 | 0.527533 |
Target: 5'- gUGGCGAGCUgGCCac-GUCGUCGu- -3' miRNA: 3'- aGCCGUUCGAgCGGcucCAGCAGCcu -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 53863 | 0.66 | 0.588237 |
Target: 5'- uUCGuaGGGCUUGCCGuccgcGGGUCaguggucagcgagGUCGGGc -3' miRNA: 3'- -AGCcgUUCGAGCGGC-----UCCAG-------------CAGCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 53374 | 0.67 | 0.568492 |
Target: 5'- gCGGCGAuGCUgGCC-AGcUCGUCGGc -3' miRNA: 3'- aGCCGUU-CGAgCGGcUCcAGCAGCCu -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 52704 | 0.69 | 0.403908 |
Target: 5'- gCGGCAGGUcugcccacccUCGCCGGccGGgcaGUCGGGu -3' miRNA: 3'- aGCCGUUCG----------AGCGGCU--CCag-CAGCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 49608 | 0.69 | 0.41277 |
Target: 5'- -aGGCGGGCUgGCCGAcgaacgccaGGUgGUCGaGGa -3' miRNA: 3'- agCCGUUCGAgCGGCU---------CCAgCAGC-CU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 48676 | 0.69 | 0.421752 |
Target: 5'- gCGGCAAGg-UGCCGAGaGUCGacaccagCGGAc -3' miRNA: 3'- aGCCGUUCgaGCGGCUC-CAGCa------GCCU- -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 45739 | 0.66 | 0.610198 |
Target: 5'- aCGGCAgcGGgUCGCCGGGG-CGgcgCGu- -3' miRNA: 3'- aGCCGU--UCgAGCGGCUCCaGCa--GCcu -5' |
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19276 | 3' | -58.9 | NC_004685.1 | + | 44651 | 0.66 | 0.59868 |
Target: 5'- gUGGUAguacagggggaucAGCUCGUcggaguCGGGGUUGUUGGGa -3' miRNA: 3'- aGCCGU-------------UCGAGCG------GCUCCAGCAGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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