miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19276 3' -58.9 NC_004685.1 + 59461 0.66 0.58928
Target:  5'- aCGGUcAGCUCGCCGuuggacagcucGGG-CGgcggCGGGu -3'
miRNA:   3'- aGCCGuUCGAGCGGC-----------UCCaGCa---GCCU- -5'
19276 3' -58.9 NC_004685.1 + 55782 0.67 0.53768
Target:  5'- cUUGGuCAGGCUCGCCucGGUgcggaCGUUGGc -3'
miRNA:   3'- -AGCC-GUUCGAGCGGcuCCA-----GCAGCCu -5'
19276 3' -58.9 NC_004685.1 + 17263 0.67 0.547892
Target:  5'- cCGGCAucAGCUgGa--GGGUCGUCGGc -3'
miRNA:   3'- aGCCGU--UCGAgCggcUCCAGCAGCCu -5'
19276 3' -58.9 NC_004685.1 + 53374 0.67 0.568492
Target:  5'- gCGGCGAuGCUgGCC-AGcUCGUCGGc -3'
miRNA:   3'- aGCCGUU-CGAgCGGcUCcAGCAGCCu -5'
19276 3' -58.9 NC_004685.1 + 62461 0.67 0.568492
Target:  5'- cUCGGCGaucAGCUCGUCaAGcUgGUCGGGu -3'
miRNA:   3'- -AGCCGU---UCGAGCGGcUCcAgCAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 2342 0.66 0.578866
Target:  5'- gCGGCGcaCgUCGCCGAGGUUGggcacccCGGGc -3'
miRNA:   3'- aGCCGUucG-AGCGGCUCCAGCa------GCCU- -5'
19276 3' -58.9 NC_004685.1 + 53863 0.66 0.588237
Target:  5'- uUCGuaGGGCUUGCCGuccgcGGGUCaguggucagcgagGUCGGGc -3'
miRNA:   3'- -AGCcgUUCGAGCGGC-----UCCAG-------------CAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 59697 0.66 0.58928
Target:  5'- gUCGaGCAu-CUUGUCGGGGUCcUCGGGu -3'
miRNA:   3'- -AGC-CGUucGAGCGGCUCCAGcAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 25982 0.66 0.58928
Target:  5'- cUUGGUGAGCUCGC--GGGacaGUCGGGc -3'
miRNA:   3'- -AGCCGUUCGAGCGgcUCCag-CAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 53931 0.67 0.527533
Target:  5'- gUGGCGAGCUgGCCac-GUCGUCGu- -3'
miRNA:   3'- aGCCGUUCGAgCGGcucCAGCAGCcu -5'
19276 3' -58.9 NC_004685.1 + 54055 0.67 0.517459
Target:  5'- -gGGCGauGGCUCGCCGucG-CGacUCGGAg -3'
miRNA:   3'- agCCGU--UCGAGCGGCucCaGC--AGCCU- -5'
19276 3' -58.9 NC_004685.1 + 33428 0.67 0.517459
Target:  5'- cCGGCcuGCUCGCCGAcaUCuUCGGc -3'
miRNA:   3'- aGCCGuuCGAGCGGCUccAGcAGCCu -5'
19276 3' -58.9 NC_004685.1 + 10228 0.74 0.229558
Target:  5'- cCGGUcuGGC-CGCCGGGGU-GUCGGAu -3'
miRNA:   3'- aGCCGu-UCGaGCGGCUCCAgCAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 34671 0.72 0.300216
Target:  5'- cCGGCGAGUUCGgCGAGGaCGUgauuucgcUGGAg -3'
miRNA:   3'- aGCCGUUCGAGCgGCUCCaGCA--------GCCU- -5'
19276 3' -58.9 NC_004685.1 + 32510 0.7 0.396035
Target:  5'- gCGGCAAGCUCgGCCaGGGcgcgaaccuucccggCGUCGGc -3'
miRNA:   3'- aGCCGUUCGAG-CGGcUCCa--------------GCAGCCu -5'
19276 3' -58.9 NC_004685.1 + 52704 0.69 0.403908
Target:  5'- gCGGCAGGUcugcccacccUCGCCGGccGGgcaGUCGGGu -3'
miRNA:   3'- aGCCGUUCG----------AGCGGCU--CCag-CAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 417 0.69 0.419045
Target:  5'- gCGGCGAGCUCggggcuaagcaucaGCCGcGGUCGgugaggUCGGc -3'
miRNA:   3'- aGCCGUUCGAG--------------CGGCuCCAGC------AGCCu -5'
19276 3' -58.9 NC_004685.1 + 65517 0.69 0.430851
Target:  5'- -gGGCAGGCUCgGCCG-GGUgGUuucgacgcCGGAc -3'
miRNA:   3'- agCCGUUCGAG-CGGCuCCAgCA--------GCCU- -5'
19276 3' -58.9 NC_004685.1 + 4158 0.69 0.440063
Target:  5'- cUCGGCGAGCUUGCCGAcGaCGcccgccagcUCGGc -3'
miRNA:   3'- -AGCCGUUCGAGCGGCUcCaGC---------AGCCu -5'
19276 3' -58.9 NC_004685.1 + 25895 0.68 0.458818
Target:  5'- -aGGCcAGCgCGgUGAGGUCGUCGa- -3'
miRNA:   3'- agCCGuUCGaGCgGCUCCAGCAGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.