miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19276 3' -58.9 NC_004685.1 + 14410 0.66 0.620687
Target:  5'- gCGGCAgcgucAGCUgcgCGCCGAGGcCGagGcGAa -3'
miRNA:   3'- aGCCGU-----UCGA---GCGGCUCCaGCagC-CU- -5'
19276 3' -58.9 NC_004685.1 + 49608 0.69 0.41277
Target:  5'- -aGGCGGGCUgGCCGAcgaacgccaGGUgGUCGaGGa -3'
miRNA:   3'- agCCGUUCGAgCGGCU---------CCAgCAGC-CU- -5'
19276 3' -58.9 NC_004685.1 + 33081 0.7 0.386548
Target:  5'- gCGGCGAGCgcaccCGCC-AGGUCcUCGGc -3'
miRNA:   3'- aGCCGUUCGa----GCGGcUCCAGcAGCCu -5'
19276 3' -58.9 NC_004685.1 + 65534 1.09 0.000669
Target:  5'- gUCGGCAAGCUCGCCGAGGUCGUCGGAg -3'
miRNA:   3'- -AGCCGUUCGAGCGGCUCCAGCAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 54081 0.66 0.58928
Target:  5'- aUGuCAGGgUCGCCGGGGUUGUagucgaCGGGg -3'
miRNA:   3'- aGCcGUUCgAGCGGCUCCAGCA------GCCU- -5'
19276 3' -58.9 NC_004685.1 + 61451 0.66 0.578866
Target:  5'- -gGGC-AGCgUCGCCGuAGccgacgcuguuGUCGUCGGGc -3'
miRNA:   3'- agCCGuUCG-AGCGGC-UC-----------CAGCAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 29052 0.67 0.568492
Target:  5'- gUCGcGCAGauGCUCGCCGAacuucaccaGGUCGUagaUGGu -3'
miRNA:   3'- -AGC-CGUU--CGAGCGGCU---------CCAGCA---GCCu -5'
19276 3' -58.9 NC_004685.1 + 19695 0.67 0.547892
Target:  5'- gCGGCcguGGCggGCCGAGG-CGuUCGGc -3'
miRNA:   3'- aGCCGu--UCGagCGGCUCCaGC-AGCCu -5'
19276 3' -58.9 NC_004685.1 + 12642 0.68 0.487723
Target:  5'- cCGGCu-GCUCGCCGccgggcGGGUCaaggugaagGUCGGc -3'
miRNA:   3'- aGCCGuuCGAGCGGC------UCCAG---------CAGCCu -5'
19276 3' -58.9 NC_004685.1 + 48676 0.69 0.421752
Target:  5'- gCGGCAAGg-UGCCGAGaGUCGacaccagCGGAc -3'
miRNA:   3'- aGCCGUUCgaGCGGCUC-CAGCa------GCCU- -5'
19276 3' -58.9 NC_004685.1 + 19342 0.69 0.449386
Target:  5'- aUCGGCAAGaugCGCCGcGGcgaaGUCGGc -3'
miRNA:   3'- -AGCCGUUCga-GCGGCuCCag--CAGCCu -5'
19276 3' -58.9 NC_004685.1 + 14210 0.67 0.53768
Target:  5'- gUCGcCAAGCggcUGUCGGuGUCGUCGGAg -3'
miRNA:   3'- -AGCcGUUCGa--GCGGCUcCAGCAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 45739 0.66 0.610198
Target:  5'- aCGGCAgcGGgUCGCCGGGG-CGgcgCGu- -3'
miRNA:   3'- aGCCGU--UCgAGCGGCUCCaGCa--GCcu -5'
19276 3' -58.9 NC_004685.1 + 43346 0.69 0.443779
Target:  5'- cUCGGCcaucgccucgucgcuGAGCaUC-CCGAGGUCGgggugCGGGg -3'
miRNA:   3'- -AGCCG---------------UUCG-AGcGGCUCCAGCa----GCCU- -5'
19276 3' -58.9 NC_004685.1 + 37692 0.66 0.610198
Target:  5'- gCGGCuccGGCUUGCCGGuGUUGUUGa- -3'
miRNA:   3'- aGCCGu--UCGAGCGGCUcCAGCAGCcu -5'
19276 3' -58.9 NC_004685.1 + 14707 0.67 0.544822
Target:  5'- -gGGCAAGCUgcacgccgacacggUGaCCGAGGU-GUCGGu -3'
miRNA:   3'- agCCGUUCGA--------------GC-GGCUCCAgCAGCCu -5'
19276 3' -58.9 NC_004685.1 + 131 0.69 0.439137
Target:  5'- cCGGCGcgggcgcGGCU-GCCGGGGUgGcCGGGg -3'
miRNA:   3'- aGCCGU-------UCGAgCGGCUCCAgCaGCCU- -5'
19276 3' -58.9 NC_004685.1 + 35112 0.7 0.395166
Target:  5'- cUCGGC-AGCgUCgGCCGcGGUCaUCGGAu -3'
miRNA:   3'- -AGCCGuUCG-AG-CGGCuCCAGcAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 44651 0.66 0.59868
Target:  5'- gUGGUAguacagggggaucAGCUCGUcggaguCGGGGUUGUUGGGa -3'
miRNA:   3'- aGCCGU-------------UCGAGCG------GCUCCAGCAGCCU- -5'
19276 3' -58.9 NC_004685.1 + 31755 0.66 0.577826
Target:  5'- cCGGCcAGCUccgaccacccgccCGCUGGGGUgGaCGGAc -3'
miRNA:   3'- aGCCGuUCGA-------------GCGGCUCCAgCaGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.