miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19277 3' -57.4 NC_004685.1 + 65447 1.1 0.000719
Target:  5'- gCGGUGGAGAAGCUGGCCGAACGCGUCg -3'
miRNA:   3'- -GCCACCUCUUCGACCGGCUUGCGCAG- -5'
19277 3' -57.4 NC_004685.1 + 5406 0.76 0.186498
Target:  5'- aCGGUGGuGAAGCUGGCCGAGg----- -3'
miRNA:   3'- -GCCACCuCUUCGACCGGCUUgcgcag -5'
19277 3' -57.4 NC_004685.1 + 15322 0.76 0.191428
Target:  5'- --uUGGAGGAGCUGGCgUGAccgacgcuggaaGCGCGUCg -3'
miRNA:   3'- gccACCUCUUCGACCG-GCU------------UGCGCAG- -5'
19277 3' -57.4 NC_004685.1 + 48384 0.75 0.223458
Target:  5'- cCGGUGGAGguGCUGGCgaGAGcCGCGcCc -3'
miRNA:   3'- -GCCACCUCuuCGACCGg-CUU-GCGCaG- -5'
19277 3' -57.4 NC_004685.1 + 29965 0.75 0.22922
Target:  5'- gGGUGGccgcgcuGAAGCUGGCCGc-CGCGgUCg -3'
miRNA:   3'- gCCACCu------CUUCGACCGGCuuGCGC-AG- -5'
19277 3' -57.4 NC_004685.1 + 32636 0.74 0.235107
Target:  5'- gGGUGGcGGAAGCggUGGUggUGAACGUGUCa -3'
miRNA:   3'- gCCACC-UCUUCG--ACCG--GCUUGCGCAG- -5'
19277 3' -57.4 NC_004685.1 + 53714 0.74 0.245405
Target:  5'- uGGUGccGGGAaugauuugagcuguGGCUGGCCGAugGCGg- -3'
miRNA:   3'- gCCAC--CUCU--------------UCGACCGGCUugCGCag -5'
19277 3' -57.4 NC_004685.1 + 11035 0.73 0.293917
Target:  5'- uGGUGGAucgaccugccGAcGCgGGCCGAACGCauGUCg -3'
miRNA:   3'- gCCACCU----------CUuCGaCCGGCUUGCG--CAG- -5'
19277 3' -57.4 NC_004685.1 + 30974 0.72 0.318948
Target:  5'- uGGaUGGAgucgaugcgcagccuGAAGgaGGCCGAACGCGg- -3'
miRNA:   3'- gCC-ACCU---------------CUUCgaCCGGCUUGCGCag -5'
19277 3' -57.4 NC_004685.1 + 10156 0.72 0.323528
Target:  5'- ---gGGAGAAGCUGGCgu-ACGCGUUg -3'
miRNA:   3'- gccaCCUCUUCGACCGgcuUGCGCAG- -5'
19277 3' -57.4 NC_004685.1 + 10653 0.71 0.355306
Target:  5'- gGGU-GAGggGCUGGaUCGu-CGCGUCg -3'
miRNA:   3'- gCCAcCUCuuCGACC-GGCuuGCGCAG- -5'
19277 3' -57.4 NC_004685.1 + 28754 0.71 0.363586
Target:  5'- uCGGUcucccaGGAucAGCUgcgccagcaGGCCGAGCGUGUCa -3'
miRNA:   3'- -GCCA------CCUcuUCGA---------CCGGCUUGCGCAG- -5'
19277 3' -57.4 NC_004685.1 + 17849 0.71 0.388346
Target:  5'- ---gGGAGAAGCUGGUCGGccGCaagaccaGCGUCa -3'
miRNA:   3'- gccaCCUCUUCGACCGGCU--UG-------CGCAG- -5'
19277 3' -57.4 NC_004685.1 + 41131 0.7 0.406953
Target:  5'- ---aGGAGAAGgUGcucGCCGGugGCGUCu -3'
miRNA:   3'- gccaCCUCUUCgAC---CGGCUugCGCAG- -5'
19277 3' -57.4 NC_004685.1 + 37935 0.7 0.424262
Target:  5'- gGGUGGucGGAGCUGGCCGGcaccuacACG-GUg -3'
miRNA:   3'- gCCACCu-CUUCGACCGGCU-------UGCgCAg -5'
19277 3' -57.4 NC_004685.1 + 10851 0.7 0.434482
Target:  5'- aGGUGGAGAAagcGCUGGaaG-GCGCGg- -3'
miRNA:   3'- gCCACCUCUU---CGACCggCuUGCGCag -5'
19277 3' -57.4 NC_004685.1 + 4999 0.69 0.481661
Target:  5'- -aGUGGucgcuGGAGGCgauggUGGCCGAaacgaaggauuugGCGCGUCa -3'
miRNA:   3'- gcCACC-----UCUUCG-----ACCGGCU-------------UGCGCAG- -5'
19277 3' -57.4 NC_004685.1 + 12425 0.69 0.482649
Target:  5'- -uGUGGAGcGGCUGugaccgcccgccGCCGAGCGCccgGUCa -3'
miRNA:   3'- gcCACCUCuUCGAC------------CGGCUUGCG---CAG- -5'
19277 3' -57.4 NC_004685.1 + 58762 0.68 0.512755
Target:  5'- gCGGUccugcauccaGGuGAGGaUGGCacCGAGCGCGUCg -3'
miRNA:   3'- -GCCA----------CCuCUUCgACCG--GCUUGCGCAG- -5'
19277 3' -57.4 NC_004685.1 + 7402 0.68 0.554026
Target:  5'- gCGGUGcGAGGGcGCaGGCC-AGCGCGcCg -3'
miRNA:   3'- -GCCAC-CUCUU-CGaCCGGcUUGCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.