Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19277 | 3' | -57.4 | NC_004685.1 | + | 29637 | 0.66 | 0.649548 |
Target: 5'- gGGcUGG-GAAGCccucaaGGCUGucgGCGCGUCa -3' miRNA: 3'- gCC-ACCuCUUCGa-----CCGGCu--UGCGCAG- -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 7402 | 0.68 | 0.554026 |
Target: 5'- gCGGUGcGAGGGcGCaGGCC-AGCGCGcCg -3' miRNA: 3'- -GCCAC-CUCUU-CGaCCGGcUUGCGCaG- -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 6044 | 0.67 | 0.585613 |
Target: 5'- aGGUGGAGAAGUaccCCGAGCG-GUa -3' miRNA: 3'- gCCACCUCUUCGaccGGCUUGCgCAg -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 8106 | 0.67 | 0.585613 |
Target: 5'- uCGGUGGucaacgcGCUGGCCGAGgcCGgGUUc -3' miRNA: 3'- -GCCACCucuu---CGACCGGCUU--GCgCAG- -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 58463 | 0.67 | 0.585613 |
Target: 5'- uCGGUGGuGAuuucGC-GGCCaccgucggcGAACGCGUUg -3' miRNA: 3'- -GCCACCuCUu---CGaCCGG---------CUUGCGCAG- -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 17236 | 0.67 | 0.596225 |
Target: 5'- gCGcGUGGcGGGAGUUcGCCGAACGCa-- -3' miRNA: 3'- -GC-CACC-UCUUCGAcCGGCUUGCGcag -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 38263 | 0.67 | 0.596225 |
Target: 5'- aGGccauuGAGAAGCUGGUCGAccaGCuCGUCu -3' miRNA: 3'- gCCac---CUCUUCGACCGGCU---UGcGCAG- -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 63268 | 0.67 | 0.606866 |
Target: 5'- ---cGcAGgcGCUGGCCGAACGgGUUg -3' miRNA: 3'- gccaCcUCuuCGACCGGCUUGCgCAG- -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 2833 | 0.66 | 0.649548 |
Target: 5'- gGGUGGGGgcGUUGGgCacGCGgGUCc -3' miRNA: 3'- gCCACCUCuuCGACCgGcuUGCgCAG- -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 38314 | 0.68 | 0.554026 |
Target: 5'- aCGGUGaAGGcgcgGGcCUGGCCGAucuGCGCGa- -3' miRNA: 3'- -GCCACcUCU----UC-GACCGGCU---UGCGCag -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 58762 | 0.68 | 0.512755 |
Target: 5'- gCGGUccugcauccaGGuGAGGaUGGCacCGAGCGCGUCg -3' miRNA: 3'- -GCCA----------CCuCUUCgACCG--GCUUGCGCAG- -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 12425 | 0.69 | 0.482649 |
Target: 5'- -uGUGGAGcGGCUGugaccgcccgccGCCGAGCGCccgGUCa -3' miRNA: 3'- gcCACCUCuUCGAC------------CGGCUUGCG---CAG- -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 53714 | 0.74 | 0.245405 |
Target: 5'- uGGUGccGGGAaugauuugagcuguGGCUGGCCGAugGCGg- -3' miRNA: 3'- gCCAC--CUCU--------------UCGACCGGCUugCGCag -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 30974 | 0.72 | 0.318948 |
Target: 5'- uGGaUGGAgucgaugcgcagccuGAAGgaGGCCGAACGCGg- -3' miRNA: 3'- gCC-ACCU---------------CUUCgaCCGGCUUGCGCag -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 10156 | 0.72 | 0.323528 |
Target: 5'- ---gGGAGAAGCUGGCgu-ACGCGUUg -3' miRNA: 3'- gccaCCUCUUCGACCGgcuUGCGCAG- -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 10653 | 0.71 | 0.355306 |
Target: 5'- gGGU-GAGggGCUGGaUCGu-CGCGUCg -3' miRNA: 3'- gCCAcCUCuuCGACC-GGCuuGCGCAG- -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 28754 | 0.71 | 0.363586 |
Target: 5'- uCGGUcucccaGGAucAGCUgcgccagcaGGCCGAGCGUGUCa -3' miRNA: 3'- -GCCA------CCUcuUCGA---------CCGGCUUGCGCAG- -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 17849 | 0.71 | 0.388346 |
Target: 5'- ---gGGAGAAGCUGGUCGGccGCaagaccaGCGUCa -3' miRNA: 3'- gccaCCUCUUCGACCGGCU--UG-------CGCAG- -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 41131 | 0.7 | 0.406953 |
Target: 5'- ---aGGAGAAGgUGcucGCCGGugGCGUCu -3' miRNA: 3'- gccaCCUCUUCgAC---CGGCUugCGCAG- -5' |
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19277 | 3' | -57.4 | NC_004685.1 | + | 37935 | 0.7 | 0.424262 |
Target: 5'- gGGUGGucGGAGCUGGCCGGcaccuacACG-GUg -3' miRNA: 3'- gCCACCu-CUUCGACCGGCU-------UGCgCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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