Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 2326 | 0.69 | 0.505605 |
Target: 5'- uGCGcGACCaguUGACGCGGCgcacgucgCCGAG-GUUGg -3' miRNA: 3'- -CGC-CUGG---ACUGCGCCG--------GGCUUaCAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 38524 | 0.69 | 0.505605 |
Target: 5'- -aGGACC-GGCGCGGCggCGAGcGUCGc -3' miRNA: 3'- cgCCUGGaCUGCGCCGg-GCUUaCAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 43140 | 0.69 | 0.505605 |
Target: 5'- aGCGcGAuCCUGGCGaCGcGCaCCGAGUG-CGg -3' miRNA: 3'- -CGC-CU-GGACUGC-GC-CG-GGCUUACaGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 28038 | 0.69 | 0.495701 |
Target: 5'- aGCGGGCCgaUGACGacaGGCCgaugcaccgCGGAgGUCGa -3' miRNA: 3'- -CGCCUGG--ACUGCg--CCGG---------GCUUaCAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 12478 | 0.69 | 0.466539 |
Target: 5'- gGCcGACCgugGACGCGGCCggugccgccaaCGAG-GUCGg -3' miRNA: 3'- -CGcCUGGa--CUGCGCCGG-----------GCUUaCAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 40490 | 0.7 | 0.411045 |
Target: 5'- aGCGcGGCCUGuuGCGCGGCCggCGAcagcuUGUUGa -3' miRNA: 3'- -CGC-CUGGAC--UGCGCCGG--GCUu----ACAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 62738 | 0.71 | 0.376401 |
Target: 5'- uGCGGGCUUGAC-CGGCUCGGggGcCa -3' miRNA: 3'- -CGCCUGGACUGcGCCGGGCUuaCaGc -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 17815 | 0.72 | 0.320684 |
Target: 5'- gGCGGGCaagcugCUGGC-CGGCCUGAA-GUCGg -3' miRNA: 3'- -CGCCUG------GACUGcGCCGGGCUUaCAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 11036 | 0.74 | 0.271377 |
Target: 5'- gGUGGAUCgaccugccGACGCGGgCCGAacgcAUGUCGg -3' miRNA: 3'- -CGCCUGGa-------CUGCGCCgGGCU----UACAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 5444 | 0.68 | 0.52566 |
Target: 5'- gGUGGACCUGuaucUGCGGgCCGGcgcggGUCa -3' miRNA: 3'- -CGCCUGGACu---GCGCCgGGCUua---CAGc -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 52152 | 0.68 | 0.546008 |
Target: 5'- aGCGGua-UGcGCGCGGCCCGGcgaaguUGUUGa -3' miRNA: 3'- -CGCCuggAC-UGCGCCGGGCUu-----ACAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 30237 | 0.68 | 0.566602 |
Target: 5'- cUGGACCcaGGCGCGGCCCu--UGcCGc -3' miRNA: 3'- cGCCUGGa-CUGCGCCGGGcuuACaGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 65119 | 1.1 | 0.000809 |
Target: 5'- aGCGGACCUGACGCGGCCCGAAUGUCGc -3' miRNA: 3'- -CGCCUGGACUGCGCCGGGCUUACAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 19694 | 0.66 | 0.681693 |
Target: 5'- aGCGG-CC-GugGCGGgCCGAGgcguUCGg -3' miRNA: 3'- -CGCCuGGaCugCGCCgGGCUUac--AGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 53540 | 0.66 | 0.681693 |
Target: 5'- --cGACCUGGCGCGGCgCGGccGa-- -3' miRNA: 3'- cgcCUGGACUGCGCCGgGCUuaCagc -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 40764 | 0.66 | 0.681693 |
Target: 5'- uGCGcGCCgcccaGCGGCCCGg--GUCGa -3' miRNA: 3'- -CGCcUGGacug-CGCCGGGCuuaCAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 29702 | 0.66 | 0.66813 |
Target: 5'- aGCGGGuCCgguGCGCcagggucagggucuGGCCCGAGgugcgGUCGc -3' miRNA: 3'- -CGCCU-GGac-UGCG--------------CCGGGCUUa----CAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 64512 | 0.66 | 0.660805 |
Target: 5'- uGCGGcuuccACCUgacgacGACGUGGCCguCGAGUGUg- -3' miRNA: 3'- -CGCC-----UGGA------CUGCGCCGG--GCUUACAgc -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 50893 | 0.67 | 0.618807 |
Target: 5'- cGCGGugCc-GCGCGGuCCuCGGcgGUCa -3' miRNA: 3'- -CGCCugGacUGCGCC-GG-GCUuaCAGc -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 67795 | 0.67 | 0.58739 |
Target: 5'- aGCGGGCacgGcCGCGGCCUGAccGaCGc -3' miRNA: 3'- -CGCCUGga-CuGCGCCGGGCUuaCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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