Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 49844 | 0.66 | 0.692077 |
Target: 5'- gGUGGACaucaucuCGCGGCCCucaggGUCGg -3' miRNA: 3'- -CGCCUGgacu---GCGCCGGGcuua-CAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 39692 | 0.67 | 0.591565 |
Target: 5'- gGCGGGCCUGuCGCaGGCgaccgacuacuccagCCGGAUcaccGUCa -3' miRNA: 3'- -CGCCUGGACuGCG-CCG---------------GGCUUA----CAGc -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 4021 | 0.67 | 0.597838 |
Target: 5'- gGCuGGCCUucGCGCGGCUCGggU-UCGg -3' miRNA: 3'- -CGcCUGGAc-UGCGCCGGGCuuAcAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 57961 | 0.67 | 0.629312 |
Target: 5'- aGCGGGCCguGCGCGGUgucagcgcacagCCGggUGa-- -3' miRNA: 3'- -CGCCUGGacUGCGCCG------------GGCuuACagc -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 35924 | 0.67 | 0.639819 |
Target: 5'- uGUGGAUUc-GCGCGG-CUGggUGUCGg -3' miRNA: 3'- -CGCCUGGacUGCGCCgGGCuuACAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 46386 | 0.67 | 0.639819 |
Target: 5'- cGCGGuuCUcGGCGUGGCCgCGGgcGUGaUCGc -3' miRNA: 3'- -CGCCugGA-CUGCGCCGG-GCU--UAC-AGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 25558 | 0.66 | 0.671265 |
Target: 5'- cGCGGACUgcaGCGCGGUggugCGcuUGUCGg -3' miRNA: 3'- -CGCCUGGac-UGCGCCGg---GCuuACAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 35289 | 0.66 | 0.671265 |
Target: 5'- cGUGGACCUGugGCuGCCgGGc----- -3' miRNA: 3'- -CGCCUGGACugCGcCGGgCUuacagc -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 40585 | 0.66 | 0.671265 |
Target: 5'- cUGGGCC-GGCGCGGCCgGuucccUCGg -3' miRNA: 3'- cGCCUGGaCUGCGCCGGgCuuac-AGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 48752 | 0.68 | 0.566602 |
Target: 5'- uUGGGcuCCUGGuCGUGGCCCaGcAUGUCGc -3' miRNA: 3'- cGCCU--GGACU-GCGCCGGG-CuUACAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 38324 | 0.68 | 0.556278 |
Target: 5'- cGCGGGCCUGGC-CGaucuGCgCGAGcugGUCGa -3' miRNA: 3'- -CGCCUGGACUGcGC----CGgGCUUa--CAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 40552 | 0.69 | 0.505605 |
Target: 5'- aGCGGAgCUGGaGUGGaCCGcGGUGUCGa -3' miRNA: 3'- -CGCCUgGACUgCGCCgGGC-UUACAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 48160 | 0.72 | 0.320684 |
Target: 5'- gGCuGGCCcGAUGUGGCCCGGcucGUCGg -3' miRNA: 3'- -CGcCUGGaCUGCGCCGGGCUua-CAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 15754 | 0.72 | 0.328253 |
Target: 5'- uGCGGACCcucaucGACGUGGCCUGGGccUGcaUCGa -3' miRNA: 3'- -CGCCUGGa-----CUGCGCCGGGCUU--AC--AGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 61872 | 0.72 | 0.351743 |
Target: 5'- aGCGGACCgcaccccguUGAC-CGGcCCCGAGUGcCa -3' miRNA: 3'- -CGCCUGG---------ACUGcGCC-GGGCUUACaGc -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 51221 | 0.71 | 0.390883 |
Target: 5'- aGCGGGCCauccagcucaugcuUGAUgaugcucaGCGGCuuGAGUGUCc -3' miRNA: 3'- -CGCCUGG--------------ACUG--------CGCCGggCUUACAGc -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 7804 | 0.7 | 0.42001 |
Target: 5'- uGCGGuAgCUGACGCGGgaCUGGAUGUg- -3' miRNA: 3'- -CGCC-UgGACUGCGCCg-GGCUUACAgc -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 3850 | 0.7 | 0.435518 |
Target: 5'- cGCGGcgaggugggccaguGCCUGcucGCGCuGCUCGggUGUCa -3' miRNA: 3'- -CGCC--------------UGGAC---UGCGcCGGGCuuACAGc -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 3985 | 0.7 | 0.447598 |
Target: 5'- cGCGGGCa-GACGacagcCGGCCCGGuguaGUCGa -3' miRNA: 3'- -CGCCUGgaCUGC-----GCCGGGCUua--CAGC- -5' |
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19279 | 5' | -57.9 | NC_004685.1 | + | 2326 | 0.69 | 0.505605 |
Target: 5'- uGCGcGACCaguUGACGCGGCgcacgucgCCGAG-GUUGg -3' miRNA: 3'- -CGC-CUGG---ACUGCGCCG--------GGCUUaCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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