miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19279 5' -57.9 NC_004685.1 + 2326 0.69 0.505605
Target:  5'- uGCGcGACCaguUGACGCGGCgcacgucgCCGAG-GUUGg -3'
miRNA:   3'- -CGC-CUGG---ACUGCGCCG--------GGCUUaCAGC- -5'
19279 5' -57.9 NC_004685.1 + 3850 0.7 0.435518
Target:  5'- cGCGGcgaggugggccaguGCCUGcucGCGCuGCUCGggUGUCa -3'
miRNA:   3'- -CGCC--------------UGGAC---UGCGcCGGGCuuACAGc -5'
19279 5' -57.9 NC_004685.1 + 3985 0.7 0.447598
Target:  5'- cGCGGGCa-GACGacagcCGGCCCGGuguaGUCGa -3'
miRNA:   3'- -CGCCUGgaCUGC-----GCCGGGCUua--CAGC- -5'
19279 5' -57.9 NC_004685.1 + 4021 0.67 0.597838
Target:  5'- gGCuGGCCUucGCGCGGCUCGggU-UCGg -3'
miRNA:   3'- -CGcCUGGAc-UGCGCCGGGCuuAcAGC- -5'
19279 5' -57.9 NC_004685.1 + 5444 0.68 0.52566
Target:  5'- gGUGGACCUGuaucUGCGGgCCGGcgcggGUCa -3'
miRNA:   3'- -CGCCUGGACu---GCGCCgGGCUua---CAGc -5'
19279 5' -57.9 NC_004685.1 + 7804 0.7 0.42001
Target:  5'- uGCGGuAgCUGACGCGGgaCUGGAUGUg- -3'
miRNA:   3'- -CGCC-UgGACUGCGCCg-GGCUUACAgc -5'
19279 5' -57.9 NC_004685.1 + 11036 0.74 0.271377
Target:  5'- gGUGGAUCgaccugccGACGCGGgCCGAacgcAUGUCGg -3'
miRNA:   3'- -CGCCUGGa-------CUGCGCCgGGCU----UACAGC- -5'
19279 5' -57.9 NC_004685.1 + 12478 0.69 0.466539
Target:  5'- gGCcGACCgugGACGCGGCCggugccgccaaCGAG-GUCGg -3'
miRNA:   3'- -CGcCUGGa--CUGCGCCGG-----------GCUUaCAGC- -5'
19279 5' -57.9 NC_004685.1 + 15754 0.72 0.328253
Target:  5'- uGCGGACCcucaucGACGUGGCCUGGGccUGcaUCGa -3'
miRNA:   3'- -CGCCUGGa-----CUGCGCCGGGCUU--AC--AGC- -5'
19279 5' -57.9 NC_004685.1 + 17815 0.72 0.320684
Target:  5'- gGCGGGCaagcugCUGGC-CGGCCUGAA-GUCGg -3'
miRNA:   3'- -CGCCUG------GACUGcGCCGGGCUUaCAGC- -5'
19279 5' -57.9 NC_004685.1 + 19694 0.66 0.681693
Target:  5'- aGCGG-CC-GugGCGGgCCGAGgcguUCGg -3'
miRNA:   3'- -CGCCuGGaCugCGCCgGGCUUac--AGC- -5'
19279 5' -57.9 NC_004685.1 + 25558 0.66 0.671265
Target:  5'- cGCGGACUgcaGCGCGGUggugCGcuUGUCGg -3'
miRNA:   3'- -CGCCUGGac-UGCGCCGg---GCuuACAGC- -5'
19279 5' -57.9 NC_004685.1 + 28038 0.69 0.495701
Target:  5'- aGCGGGCCgaUGACGacaGGCCgaugcaccgCGGAgGUCGa -3'
miRNA:   3'- -CGCCUGG--ACUGCg--CCGG---------GCUUaCAGC- -5'
19279 5' -57.9 NC_004685.1 + 29702 0.66 0.66813
Target:  5'- aGCGGGuCCgguGCGCcagggucagggucuGGCCCGAGgugcgGUCGc -3'
miRNA:   3'- -CGCCU-GGac-UGCG--------------CCGGGCUUa----CAGC- -5'
19279 5' -57.9 NC_004685.1 + 30237 0.68 0.566602
Target:  5'- cUGGACCcaGGCGCGGCCCu--UGcCGc -3'
miRNA:   3'- cGCCUGGa-CUGCGCCGGGcuuACaGC- -5'
19279 5' -57.9 NC_004685.1 + 30842 0.74 0.252186
Target:  5'- cGCGGGCaccgaccGGCGCGGCagCCGAAUuGUCGa -3'
miRNA:   3'- -CGCCUGga-----CUGCGCCG--GGCUUA-CAGC- -5'
19279 5' -57.9 NC_004685.1 + 35289 0.66 0.671265
Target:  5'- cGUGGACCUGugGCuGCCgGGc----- -3'
miRNA:   3'- -CGCCUGGACugCGcCGGgCUuacagc -5'
19279 5' -57.9 NC_004685.1 + 35924 0.67 0.639819
Target:  5'- uGUGGAUUc-GCGCGG-CUGggUGUCGg -3'
miRNA:   3'- -CGCCUGGacUGCGCCgGGCuuACAGC- -5'
19279 5' -57.9 NC_004685.1 + 38324 0.68 0.556278
Target:  5'- cGCGGGCCUGGC-CGaucuGCgCGAGcugGUCGa -3'
miRNA:   3'- -CGCCUGGACUGcGC----CGgGCUUa--CAGC- -5'
19279 5' -57.9 NC_004685.1 + 38524 0.69 0.505605
Target:  5'- -aGGACC-GGCGCGGCggCGAGcGUCGc -3'
miRNA:   3'- cgCCUGGaCUGCGCCGg-GCUUaCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.