miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19279 5' -57.9 NC_004685.1 + 2326 0.69 0.505605
Target:  5'- uGCGcGACCaguUGACGCGGCgcacgucgCCGAG-GUUGg -3'
miRNA:   3'- -CGC-CUGG---ACUGCGCCG--------GGCUUaCAGC- -5'
19279 5' -57.9 NC_004685.1 + 38524 0.69 0.505605
Target:  5'- -aGGACC-GGCGCGGCggCGAGcGUCGc -3'
miRNA:   3'- cgCCUGGaCUGCGCCGg-GCUUaCAGC- -5'
19279 5' -57.9 NC_004685.1 + 43140 0.69 0.505605
Target:  5'- aGCGcGAuCCUGGCGaCGcGCaCCGAGUG-CGg -3'
miRNA:   3'- -CGC-CU-GGACUGC-GC-CG-GGCUUACaGC- -5'
19279 5' -57.9 NC_004685.1 + 28038 0.69 0.495701
Target:  5'- aGCGGGCCgaUGACGacaGGCCgaugcaccgCGGAgGUCGa -3'
miRNA:   3'- -CGCCUGG--ACUGCg--CCGG---------GCUUaCAGC- -5'
19279 5' -57.9 NC_004685.1 + 12478 0.69 0.466539
Target:  5'- gGCcGACCgugGACGCGGCCggugccgccaaCGAG-GUCGg -3'
miRNA:   3'- -CGcCUGGa--CUGCGCCGG-----------GCUUaCAGC- -5'
19279 5' -57.9 NC_004685.1 + 40490 0.7 0.411045
Target:  5'- aGCGcGGCCUGuuGCGCGGCCggCGAcagcuUGUUGa -3'
miRNA:   3'- -CGC-CUGGAC--UGCGCCGG--GCUu----ACAGC- -5'
19279 5' -57.9 NC_004685.1 + 62738 0.71 0.376401
Target:  5'- uGCGGGCUUGAC-CGGCUCGGggGcCa -3'
miRNA:   3'- -CGCCUGGACUGcGCCGGGCUuaCaGc -5'
19279 5' -57.9 NC_004685.1 + 17815 0.72 0.320684
Target:  5'- gGCGGGCaagcugCUGGC-CGGCCUGAA-GUCGg -3'
miRNA:   3'- -CGCCUG------GACUGcGCCGGGCUUaCAGC- -5'
19279 5' -57.9 NC_004685.1 + 11036 0.74 0.271377
Target:  5'- gGUGGAUCgaccugccGACGCGGgCCGAacgcAUGUCGg -3'
miRNA:   3'- -CGCCUGGa-------CUGCGCCgGGCU----UACAGC- -5'
19279 5' -57.9 NC_004685.1 + 5444 0.68 0.52566
Target:  5'- gGUGGACCUGuaucUGCGGgCCGGcgcggGUCa -3'
miRNA:   3'- -CGCCUGGACu---GCGCCgGGCUua---CAGc -5'
19279 5' -57.9 NC_004685.1 + 52152 0.68 0.546008
Target:  5'- aGCGGua-UGcGCGCGGCCCGGcgaaguUGUUGa -3'
miRNA:   3'- -CGCCuggAC-UGCGCCGGGCUu-----ACAGC- -5'
19279 5' -57.9 NC_004685.1 + 30237 0.68 0.566602
Target:  5'- cUGGACCcaGGCGCGGCCCu--UGcCGc -3'
miRNA:   3'- cGCCUGGa-CUGCGCCGGGcuuACaGC- -5'
19279 5' -57.9 NC_004685.1 + 65119 1.1 0.000809
Target:  5'- aGCGGACCUGACGCGGCCCGAAUGUCGc -3'
miRNA:   3'- -CGCCUGGACUGCGCCGGGCUUACAGC- -5'
19279 5' -57.9 NC_004685.1 + 19694 0.66 0.681693
Target:  5'- aGCGG-CC-GugGCGGgCCGAGgcguUCGg -3'
miRNA:   3'- -CGCCuGGaCugCGCCgGGCUUac--AGC- -5'
19279 5' -57.9 NC_004685.1 + 53540 0.66 0.681693
Target:  5'- --cGACCUGGCGCGGCgCGGccGa-- -3'
miRNA:   3'- cgcCUGGACUGCGCCGgGCUuaCagc -5'
19279 5' -57.9 NC_004685.1 + 40764 0.66 0.681693
Target:  5'- uGCGcGCCgcccaGCGGCCCGg--GUCGa -3'
miRNA:   3'- -CGCcUGGacug-CGCCGGGCuuaCAGC- -5'
19279 5' -57.9 NC_004685.1 + 29702 0.66 0.66813
Target:  5'- aGCGGGuCCgguGCGCcagggucagggucuGGCCCGAGgugcgGUCGc -3'
miRNA:   3'- -CGCCU-GGac-UGCG--------------CCGGGCUUa----CAGC- -5'
19279 5' -57.9 NC_004685.1 + 64512 0.66 0.660805
Target:  5'- uGCGGcuuccACCUgacgacGACGUGGCCguCGAGUGUg- -3'
miRNA:   3'- -CGCC-----UGGA------CUGCGCCGG--GCUUACAgc -5'
19279 5' -57.9 NC_004685.1 + 50893 0.67 0.618807
Target:  5'- cGCGGugCc-GCGCGGuCCuCGGcgGUCa -3'
miRNA:   3'- -CGCCugGacUGCGCC-GG-GCUuaCAGc -5'
19279 5' -57.9 NC_004685.1 + 67795 0.67 0.58739
Target:  5'- aGCGGGCacgGcCGCGGCCUGAccGaCGc -3'
miRNA:   3'- -CGCCUGga-CuGCGCCGGGCUuaCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.