Results 21 - 40 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 52152 | 0.68 | 0.546008 |
Target: 5'- aGCGGua-UGcGCGCGGCCCGGcgaaguUGUUGa -3' miRNA: 3'- -CGCCuggAC-UGCGCCGGGCUu-----ACAGC- -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 5444 | 0.68 | 0.52566 |
Target: 5'- gGUGGACCUGuaucUGCGGgCCGGcgcggGUCa -3' miRNA: 3'- -CGCCUGGACu---GCGCCgGGCUua---CAGc -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 40552 | 0.69 | 0.505605 |
Target: 5'- aGCGGAgCUGGaGUGGaCCGcGGUGUCGa -3' miRNA: 3'- -CGCCUgGACUgCGCCgGGC-UUACAGC- -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 2326 | 0.69 | 0.505605 |
Target: 5'- uGCGcGACCaguUGACGCGGCgcacgucgCCGAG-GUUGg -3' miRNA: 3'- -CGC-CUGG---ACUGCGCCG--------GGCUUaCAGC- -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 38524 | 0.69 | 0.505605 |
Target: 5'- -aGGACC-GGCGCGGCggCGAGcGUCGc -3' miRNA: 3'- cgCCUGGaCUGCGCCGg-GCUUaCAGC- -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 43140 | 0.69 | 0.505605 |
Target: 5'- aGCGcGAuCCUGGCGaCGcGCaCCGAGUG-CGg -3' miRNA: 3'- -CGC-CU-GGACUGC-GC-CG-GGCUUACaGC- -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 28038 | 0.69 | 0.495701 |
Target: 5'- aGCGGGCCgaUGACGacaGGCCgaugcaccgCGGAgGUCGa -3' miRNA: 3'- -CGCCUGG--ACUGCg--CCGG---------GCUUaCAGC- -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 12478 | 0.69 | 0.466539 |
Target: 5'- gGCcGACCgugGACGCGGCCggugccgccaaCGAG-GUCGg -3' miRNA: 3'- -CGcCUGGa--CUGCGCCGG-----------GCUUaCAGC- -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 3985 | 0.7 | 0.447598 |
Target: 5'- cGCGGGCa-GACGacagcCGGCCCGGuguaGUCGa -3' miRNA: 3'- -CGCCUGgaCUGC-----GCCGGGCUua--CAGC- -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 3850 | 0.7 | 0.435518 |
Target: 5'- cGCGGcgaggugggccaguGCCUGcucGCGCuGCUCGggUGUCa -3' miRNA: 3'- -CGCC--------------UGGAC---UGCGcCGGGCuuACAGc -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 7804 | 0.7 | 0.42001 |
Target: 5'- uGCGGuAgCUGACGCGGgaCUGGAUGUg- -3' miRNA: 3'- -CGCC-UgGACUGCGCCg-GGCUUACAgc -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 40490 | 0.7 | 0.411045 |
Target: 5'- aGCGcGGCCUGuuGCGCGGCCggCGAcagcuUGUUGa -3' miRNA: 3'- -CGC-CUGGAC--UGCGCCGG--GCUu----ACAGC- -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 51221 | 0.71 | 0.390883 |
Target: 5'- aGCGGGCCauccagcucaugcuUGAUgaugcucaGCGGCuuGAGUGUCc -3' miRNA: 3'- -CGCCUGG--------------ACUG--------CGCCGggCUUACAGc -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 62738 | 0.71 | 0.376401 |
Target: 5'- uGCGGGCUUGAC-CGGCUCGGggGcCa -3' miRNA: 3'- -CGCCUGGACUGcGCCGGGCUuaCaGc -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 61872 | 0.72 | 0.351743 |
Target: 5'- aGCGGACCgcaccccguUGAC-CGGcCCCGAGUGcCa -3' miRNA: 3'- -CGCCUGG---------ACUGcGCC-GGGCUUACaGc -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 15754 | 0.72 | 0.328253 |
Target: 5'- uGCGGACCcucaucGACGUGGCCUGGGccUGcaUCGa -3' miRNA: 3'- -CGCCUGGa-----CUGCGCCGGGCUU--AC--AGC- -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 17815 | 0.72 | 0.320684 |
Target: 5'- gGCGGGCaagcugCUGGC-CGGCCUGAA-GUCGg -3' miRNA: 3'- -CGCCUG------GACUGcGCCGGGCUUaCAGC- -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 48160 | 0.72 | 0.320684 |
Target: 5'- gGCuGGCCcGAUGUGGCCCGGcucGUCGg -3' miRNA: 3'- -CGcCUGGaCUGCGCCGGGCUua-CAGC- -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 58311 | 0.73 | 0.296642 |
Target: 5'- cGCGGACCUugguCGGCCCGGccggcacagccucgGUGUCGg -3' miRNA: 3'- -CGCCUGGAcugcGCCGGGCU--------------UACAGC- -5' |
|||||||
19279 | 5' | -57.9 | NC_004685.1 | + | 11036 | 0.74 | 0.271377 |
Target: 5'- gGUGGAUCgaccugccGACGCGGgCCGAacgcAUGUCGg -3' miRNA: 3'- -CGCCUGGa-------CUGCGCCgGGCU----UACAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home