miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19282 3' -62 NC_004685.1 + 63010 1.11 0.000188
Target:  5'- cUCCUUGGCCCCGGCCUUGCGCAGCGCg -3'
miRNA:   3'- -AGGAACCGGGGCCGGAACGCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 62640 0.86 0.015128
Target:  5'- ----cGGCCCUGGCgUUGCGCAGCGCg -3'
miRNA:   3'- aggaaCCGGGGCCGgAACGCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 55260 0.76 0.089402
Target:  5'- cUCCUUcGCCUCGGCCUcggcGCGCAGCu- -3'
miRNA:   3'- -AGGAAcCGGGGCCGGAa---CGCGUCGcg -5'
19282 3' -62 NC_004685.1 + 57073 0.76 0.091853
Target:  5'- uUCCUg---CCCGGCCUUGCGCaccucggcGGCGCg -3'
miRNA:   3'- -AGGAaccgGGGCCGGAACGCG--------UCGCG- -5'
19282 3' -62 NC_004685.1 + 49220 0.75 0.096946
Target:  5'- gUCCgcgUGGCCaacgCGGCCgaaCGCAGCGCc -3'
miRNA:   3'- -AGGa--ACCGGg---GCCGGaacGCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 45808 0.75 0.102305
Target:  5'- ---cUGGCCCUGGaggugGCGCAGCGCa -3'
miRNA:   3'- aggaACCGGGGCCggaa-CGCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 1152 0.75 0.11087
Target:  5'- aCCagggUGGCCCuCGGCCaucGUGCAGCGg -3'
miRNA:   3'- aGGa---ACCGGG-GCCGGaa-CGCGUCGCg -5'
19282 3' -62 NC_004685.1 + 61505 0.75 0.113871
Target:  5'- cUCCUcGaaCCCGGCCUcgUGCGCGGCGg -3'
miRNA:   3'- -AGGAaCcgGGGCCGGA--ACGCGUCGCg -5'
19282 3' -62 NC_004685.1 + 50754 0.74 0.133174
Target:  5'- aCCUUGGCcgccagcaucucgCCCGcGCCgu-CGCGGCGCg -3'
miRNA:   3'- aGGAACCG-------------GGGC-CGGaacGCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 25296 0.74 0.133526
Target:  5'- cUCCUUGGUCuuGGCCUUcacGuCGUAGCaGCc -3'
miRNA:   3'- -AGGAACCGGggCCGGAA---C-GCGUCG-CG- -5'
19282 3' -62 NC_004685.1 + 68537 0.73 0.140745
Target:  5'- gCUgUGGCCCCGGCCaguccgaUGCG-GGCGCc -3'
miRNA:   3'- aGGaACCGGGGCCGGa------ACGCgUCGCG- -5'
19282 3' -62 NC_004685.1 + 57015 0.73 0.151848
Target:  5'- cUCUgcGGCCCgcaccuccgacagCGGCCgcgUGcCGCGGCGCa -3'
miRNA:   3'- -AGGaaCCGGG-------------GCCGGa--AC-GCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 64598 0.72 0.166303
Target:  5'- cUCCUcGGCCUccuugauuuCGGCCUUGCGUugcuuggcccagcggAGCGUu -3'
miRNA:   3'- -AGGAaCCGGG---------GCCGGAACGCG---------------UCGCG- -5'
19282 3' -62 NC_004685.1 + 42811 0.72 0.177829
Target:  5'- aCCcUGGCuCCCGGCCaggucgcccuguUUGCGCugAGCGg -3'
miRNA:   3'- aGGaACCG-GGGCCGG------------AACGCG--UCGCg -5'
19282 3' -62 NC_004685.1 + 7335 0.71 0.192005
Target:  5'- aCCguuUGGCCCCGGCgUggaagGCGaaGGCGUg -3'
miRNA:   3'- aGGa--ACCGGGGCCGgAa----CGCg-UCGCG- -5'
19282 3' -62 NC_004685.1 + 61553 0.71 0.199964
Target:  5'- aUCCUcGGagaugaugcggaaCCCGGCCUcgGC-CAGCGCg -3'
miRNA:   3'- -AGGAaCCg------------GGGCCGGAa-CGcGUCGCG- -5'
19282 3' -62 NC_004685.1 + 17160 0.71 0.21244
Target:  5'- aCCUgaUGGCgUCGGCgUUcGcCGCGGCGCu -3'
miRNA:   3'- aGGA--ACCGgGGCCGgAA-C-GCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 148 0.7 0.217833
Target:  5'- gCCggggUGGCCggggagcugcUCGGCuugccCUUGCGCGGCGUg -3'
miRNA:   3'- aGGa---ACCGG----------GGCCG-----GAACGCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 10077 0.7 0.234718
Target:  5'- aCCUggGGCCgUGGCUggaagGCGCAGCcgguGCg -3'
miRNA:   3'- aGGAa-CCGGgGCCGGaa---CGCGUCG----CG- -5'
19282 3' -62 NC_004685.1 + 68184 0.7 0.23705
Target:  5'- aCCUcaugcggGGCCagcggguucucuacgUCGGCCUaGCGguGCGCg -3'
miRNA:   3'- aGGAa------CCGG---------------GGCCGGAaCGCguCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.