miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19282 3' -62 NC_004685.1 + 148 0.7 0.217833
Target:  5'- gCCggggUGGCCggggagcugcUCGGCuugccCUUGCGCGGCGUg -3'
miRNA:   3'- aGGa---ACCGG----------GGCCG-----GAACGCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 745 0.66 0.428389
Target:  5'- uUCUgaagcgUGGCCUgcuCGGUCUUG-GCGGCaGCa -3'
miRNA:   3'- -AGGa-----ACCGGG---GCCGGAACgCGUCG-CG- -5'
19282 3' -62 NC_004685.1 + 1152 0.75 0.11087
Target:  5'- aCCagggUGGCCCuCGGCCaucGUGCAGCGg -3'
miRNA:   3'- aGGa---ACCGGG-GCCGGaa-CGCGUCGCg -5'
19282 3' -62 NC_004685.1 + 2863 0.69 0.271774
Target:  5'- -gCUUGGgCUugCGGCCggUGCGCAcgGCGCu -3'
miRNA:   3'- agGAACCgGG--GCCGGa-ACGCGU--CGCG- -5'
19282 3' -62 NC_004685.1 + 2895 0.68 0.33594
Target:  5'- gCCaggaucgGGCaCCCGGCCccagUGC-CGGUGCg -3'
miRNA:   3'- aGGaa-----CCG-GGGCCGGa---ACGcGUCGCG- -5'
19282 3' -62 NC_004685.1 + 3667 0.69 0.271774
Target:  5'- gCC-UGGCCCgcuucucggCGGCUUUggugugggugGCGCAGCGUu -3'
miRNA:   3'- aGGaACCGGG---------GCCGGAA----------CGCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 4451 0.68 0.33594
Target:  5'- gUUCggGcGCCCCGGCgagUGCGUcgaugagacgAGCGCg -3'
miRNA:   3'- -AGGaaC-CGGGGCCGga-ACGCG----------UCGCG- -5'
19282 3' -62 NC_004685.1 + 7335 0.71 0.192005
Target:  5'- aCCguuUGGCCCCGGCgUggaagGCGaaGGCGUg -3'
miRNA:   3'- aGGa--ACCGGGGCCGgAa----CGCg-UCGCG- -5'
19282 3' -62 NC_004685.1 + 10077 0.7 0.234718
Target:  5'- aCCUggGGCCgUGGCUggaagGCGCAGCcgguGCg -3'
miRNA:   3'- aGGAa-CCGGgGCCGGaa---CGCGUCG----CG- -5'
19282 3' -62 NC_004685.1 + 11070 0.67 0.359654
Target:  5'- gUCggUGGCCgCGGCgacacUGCGCAGCa- -3'
miRNA:   3'- -AGgaACCGGgGCCGga---ACGCGUCGcg -5'
19282 3' -62 NC_004685.1 + 12600 0.67 0.351621
Target:  5'- aCCUgaaguauGUUCgGGCCaaccUGCGCGGCGCg -3'
miRNA:   3'- aGGAac-----CGGGgCCGGa---ACGCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 13491 0.66 0.437514
Target:  5'- ---gUGGCCUaugGGCCUgacauUGCAGCGCc -3'
miRNA:   3'- aggaACCGGGg--CCGGAac---GCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 13665 0.67 0.359654
Target:  5'- uUCCgacaucgccgGGUCguaCUGGCCgcggGUGCGGCGCa -3'
miRNA:   3'- -AGGaa--------CCGG---GGCCGGaa--CGCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 17160 0.71 0.21244
Target:  5'- aCCUgaUGGCgUCGGCgUUcGcCGCGGCGCu -3'
miRNA:   3'- aGGA--ACCGgGGCCGgAA-C-GCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 18656 0.66 0.425674
Target:  5'- ----cGGCCCCGGUCcUGaCGCAGaucagggcuggggcCGCa -3'
miRNA:   3'- aggaaCCGGGGCCGGaAC-GCGUC--------------GCG- -5'
19282 3' -62 NC_004685.1 + 19188 0.66 0.410482
Target:  5'- cUCCggGGCUgCCGGCCgguucGUGuCAGCGa -3'
miRNA:   3'- -AGGaaCCGG-GGCCGGaa---CGC-GUCGCg -5'
19282 3' -62 NC_004685.1 + 21282 0.7 0.240585
Target:  5'- aCCgaGGCCCUGGUgg-GCGCGGCu- -3'
miRNA:   3'- aGGaaCCGGGGCCGgaaCGCGUCGcg -5'
19282 3' -62 NC_004685.1 + 24465 0.66 0.419378
Target:  5'- gUCCUgcUGcGaaucaCCCGGCUcgGcCGCGGCGUa -3'
miRNA:   3'- -AGGA--AC-Cg----GGGCCGGaaC-GCGUCGCG- -5'
19282 3' -62 NC_004685.1 + 25296 0.74 0.133526
Target:  5'- cUCCUUGGUCuuGGCCUUcacGuCGUAGCaGCc -3'
miRNA:   3'- -AGGAACCGGggCCGGAA---C-GCGUCG-CG- -5'
19282 3' -62 NC_004685.1 + 25422 0.66 0.419378
Target:  5'- uUCCUUGGUguagucgggcgCCaagaucgGGCCgggcUGCuGCGGCGCu -3'
miRNA:   3'- -AGGAACCG-----------GGg------CCGGa---ACG-CGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.