miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19282 5' -53.9 NC_004685.1 + 204 0.73 0.470417
Target:  5'- cGGCGCgacgagugCGCGCugGUGUGCGGCUUgACu -3'
miRNA:   3'- aCCGUG--------GCGCG--UACAUGCUGAAgUGc -5'
19282 5' -53.9 NC_004685.1 + 2186 0.66 0.859969
Target:  5'- aGcGCACCGCGCAccgcgaGUGCGAgCUggccgagCugGa -3'
miRNA:   3'- aC-CGUGGCGCGUa-----CAUGCU-GAa------GugC- -5'
19282 5' -53.9 NC_004685.1 + 2904 0.66 0.819993
Target:  5'- gGGCACCcggccccaGUGCcgGUGCGGCgggccaguucuuggUCugGa -3'
miRNA:   3'- aCCGUGG--------CGCGuaCAUGCUGa-------------AGugC- -5'
19282 5' -53.9 NC_004685.1 + 3603 0.71 0.585792
Target:  5'- cGGCACCGCGac--UACGGCggCACc -3'
miRNA:   3'- aCCGUGGCGCguacAUGCUGaaGUGc -5'
19282 5' -53.9 NC_004685.1 + 3804 0.68 0.757759
Target:  5'- cGGCACUGUGg----GCGACUgUCACGg -3'
miRNA:   3'- aCCGUGGCGCguacaUGCUGA-AGUGC- -5'
19282 5' -53.9 NC_004685.1 + 4686 0.67 0.787752
Target:  5'- -cGCACCGaGCGuccuguacgggcUGUGCGGCUaCGCGa -3'
miRNA:   3'- acCGUGGCgCGU------------ACAUGCUGAaGUGC- -5'
19282 5' -53.9 NC_004685.1 + 8425 0.68 0.747493
Target:  5'- aUGGC-CCGCGUagccGUGgACGAacUCACGg -3'
miRNA:   3'- -ACCGuGGCGCG----UACaUGCUgaAGUGC- -5'
19282 5' -53.9 NC_004685.1 + 11547 0.72 0.510201
Target:  5'- cGGCGCUGCGCugcgcugggcaucGUGU-CGGCUgucCACGg -3'
miRNA:   3'- aCCGUGGCGCG-------------UACAuGCUGAa--GUGC- -5'
19282 5' -53.9 NC_004685.1 + 11793 0.68 0.726626
Target:  5'- aGGCGCgGCGCAUGgucgaaGAgUUCAaCGc -3'
miRNA:   3'- aCCGUGgCGCGUACaug---CUgAAGU-GC- -5'
19282 5' -53.9 NC_004685.1 + 14060 0.68 0.716047
Target:  5'- cGGCGCC-CGCGaGcGCGGCUUCGg- -3'
miRNA:   3'- aCCGUGGcGCGUaCaUGCUGAAGUgc -5'
19282 5' -53.9 NC_004685.1 + 18028 0.66 0.82546
Target:  5'- cGGCcaacaugcuGCCGCGCGcgGUGaugcagGGCUUCACc -3'
miRNA:   3'- aCCG---------UGGCGCGUa-CAUg-----CUGAAGUGc -5'
19282 5' -53.9 NC_004685.1 + 18521 0.66 0.851674
Target:  5'- aGGCGCUGCGCG-GUAuCGACa----- -3'
miRNA:   3'- aCCGUGGCGCGUaCAU-GCUGaagugc -5'
19282 5' -53.9 NC_004685.1 + 18929 0.66 0.859969
Target:  5'- aUGGCcgacaugaugGCCGCGC-UGUGCcuGGCgcUCGCGc -3'
miRNA:   3'- -ACCG----------UGGCGCGuACAUG--CUGa-AGUGC- -5'
19282 5' -53.9 NC_004685.1 + 23057 0.68 0.737111
Target:  5'- cGGCGgUGUGCAaaucuucgACGACUUCGCu -3'
miRNA:   3'- aCCGUgGCGCGUaca-----UGCUGAAGUGc -5'
19282 5' -53.9 NC_004685.1 + 23904 0.66 0.857504
Target:  5'- uUGcGCACCGCcucguugcgcgccaGCGUGUcgaGCaGACUcaUCGCGg -3'
miRNA:   3'- -AC-CGUGGCG--------------CGUACA---UG-CUGA--AGUGC- -5'
19282 5' -53.9 NC_004685.1 + 24477 0.68 0.716047
Target:  5'- cGGCAacCCGCGCG---ACGACcugUUCGCGc -3'
miRNA:   3'- aCCGU--GGCGCGUacaUGCUG---AAGUGC- -5'
19282 5' -53.9 NC_004685.1 + 24920 0.66 0.859969
Target:  5'- aGGC-CCGCGCGgUGU-CGGCgUCGgGu -3'
miRNA:   3'- aCCGuGGCGCGU-ACAuGCUGaAGUgC- -5'
19282 5' -53.9 NC_004685.1 + 27136 0.69 0.66215
Target:  5'- cGGCuCUG-GCGUGUGCGACgUUgACGa -3'
miRNA:   3'- aCCGuGGCgCGUACAUGCUG-AAgUGC- -5'
19282 5' -53.9 NC_004685.1 + 27339 0.66 0.843151
Target:  5'- gUGGCACgGCGaagcauGUGUACGGCaUCuucCGu -3'
miRNA:   3'- -ACCGUGgCGCg-----UACAUGCUGaAGu--GC- -5'
19282 5' -53.9 NC_004685.1 + 28815 0.66 0.859969
Target:  5'- aGGC-CCGCGCGgcccGCGACgccagCACc -3'
miRNA:   3'- aCCGuGGCGCGUaca-UGCUGaa---GUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.