miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19282 5' -53.9 NC_004685.1 + 18028 0.66 0.82546
Target:  5'- cGGCcaacaugcuGCCGCGCGcgGUGaugcagGGCUUCACc -3'
miRNA:   3'- aCCG---------UGGCGCGUa-CAUg-----CUGAAGUGc -5'
19282 5' -53.9 NC_004685.1 + 23057 0.68 0.737111
Target:  5'- cGGCGgUGUGCAaaucuucgACGACUUCGCu -3'
miRNA:   3'- aCCGUgGCGCGUaca-----UGCUGAAGUGc -5'
19282 5' -53.9 NC_004685.1 + 45363 0.67 0.767898
Target:  5'- aGGCGCUGaucgaCGCggGUAUGuuCUUCGCGa -3'
miRNA:   3'- aCCGUGGC-----GCGuaCAUGCu-GAAGUGC- -5'
19282 5' -53.9 NC_004685.1 + 33092 0.67 0.777899
Target:  5'- aGcGCACCGCcCAguugGUgcGCGACUggaUCGCGg -3'
miRNA:   3'- aC-CGUGGCGcGUa---CA--UGCUGA---AGUGC- -5'
19282 5' -53.9 NC_004685.1 + 59299 0.67 0.797445
Target:  5'- aGGCccACCGCgGCGUcgaugGCGGCgUCGCGg -3'
miRNA:   3'- aCCG--UGGCG-CGUAca---UGCUGaAGUGC- -5'
19282 5' -53.9 NC_004685.1 + 42434 0.67 0.806967
Target:  5'- gGGCACCG-GCGgcGUACGACaacugUGCGg -3'
miRNA:   3'- aCCGUGGCgCGUa-CAUGCUGaa---GUGC- -5'
19282 5' -53.9 NC_004685.1 + 55669 0.66 0.816309
Target:  5'- -cGCGCUGCGaggGUGCGACgcuggccggCACGg -3'
miRNA:   3'- acCGUGGCGCguaCAUGCUGaa-------GUGC- -5'
19282 5' -53.9 NC_004685.1 + 2904 0.66 0.819993
Target:  5'- gGGCACCcggccccaGUGCcgGUGCGGCgggccaguucuuggUCugGa -3'
miRNA:   3'- aCCGUGG--------CGCGuaCAUGCUGa-------------AGugC- -5'
19282 5' -53.9 NC_004685.1 + 34660 0.66 0.82546
Target:  5'- cUGGCAgCGCGCcg--GCGAgUUCgGCGa -3'
miRNA:   3'- -ACCGUgGCGCGuacaUGCUgAAG-UGC- -5'
19282 5' -53.9 NC_004685.1 + 60260 0.68 0.725572
Target:  5'- cGGCGCCGgucggccCGCAUGggugAUGGuCUUCGCc -3'
miRNA:   3'- aCCGUGGC-------GCGUACa---UGCU-GAAGUGc -5'
19282 5' -53.9 NC_004685.1 + 24477 0.68 0.716047
Target:  5'- cGGCAacCCGCGCG---ACGACcugUUCGCGc -3'
miRNA:   3'- aCCGU--GGCGCGUacaUGCUG---AAGUGC- -5'
19282 5' -53.9 NC_004685.1 + 14060 0.68 0.716047
Target:  5'- cGGCGCC-CGCGaGcGCGGCUUCGg- -3'
miRNA:   3'- aCCGUGGcGCGUaCaUGCUGAAGUgc -5'
19282 5' -53.9 NC_004685.1 + 11547 0.72 0.510201
Target:  5'- cGGCGCUGCGCugcgcugggcaucGUGU-CGGCUgucCACGg -3'
miRNA:   3'- aCCGUGGCGCG-------------UACAuGCUGAa--GUGC- -5'
19282 5' -53.9 NC_004685.1 + 56277 0.71 0.536429
Target:  5'- cGGUGCUGCGUccgguccaccagcagAUcGUGCGGCUUCACc -3'
miRNA:   3'- aCCGUGGCGCG---------------UA-CAUGCUGAAGUGc -5'
19282 5' -53.9 NC_004685.1 + 46646 0.71 0.55346
Target:  5'- gGGCGCgGCGC-UGUACGGCcuguuugUgGCGg -3'
miRNA:   3'- aCCGUGgCGCGuACAUGCUGa------AgUGC- -5'
19282 5' -53.9 NC_004685.1 + 38504 0.7 0.60537
Target:  5'- gGGCACCGCGCGgaucgccuuCGACaUCAuCGa -3'
miRNA:   3'- aCCGUGGCGCGUacau-----GCUGaAGU-GC- -5'
19282 5' -53.9 NC_004685.1 + 61701 0.7 0.607551
Target:  5'- aGGCAUUGCGCAccuccaACGAC-UCGCGg -3'
miRNA:   3'- aCCGUGGCGCGUaca---UGCUGaAGUGC- -5'
19282 5' -53.9 NC_004685.1 + 27136 0.69 0.66215
Target:  5'- cGGCuCUG-GCGUGUGCGACgUUgACGa -3'
miRNA:   3'- aCCGuGGCgCGUACAUGCUG-AAgUGC- -5'
19282 5' -53.9 NC_004685.1 + 42503 0.69 0.694656
Target:  5'- cGGCAgCCGCcgGUGcugACGugUUCGCGg -3'
miRNA:   3'- aCCGU-GGCGcgUACa--UGCugAAGUGC- -5'
19282 5' -53.9 NC_004685.1 + 43355 0.69 0.698956
Target:  5'- cGGCAUCGCGCAgcaggACGGCUccuacccgaaccgcuUCAaCGg -3'
miRNA:   3'- aCCGUGGCGCGUaca--UGCUGA---------------AGU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.