miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19283 5' -60.1 NC_004685.1 + 61175 1.08 0.000581
Target:  5'- uCGACUGCGGCCCAUCCGGUAGCGGACc -3'
miRNA:   3'- -GCUGACGCCGGGUAGGCCAUCGCCUG- -5'
19283 5' -60.1 NC_004685.1 + 33164 0.77 0.103995
Target:  5'- uCGACaccgGUGGCaCCggCCGGUGGUGGGCg -3'
miRNA:   3'- -GCUGa---CGCCG-GGuaGGCCAUCGCCUG- -5'
19283 5' -60.1 NC_004685.1 + 68535 0.75 0.139476
Target:  5'- gGGCUGUGGCCCcggccaGUCCGau-GCGGGCg -3'
miRNA:   3'- gCUGACGCCGGG------UAGGCcauCGCCUG- -5'
19283 5' -60.1 NC_004685.1 + 53857 0.72 0.221843
Target:  5'- uCGAUgaUGCGGCCguugcgCAUCCGGUAGaucggcuGGACg -3'
miRNA:   3'- -GCUG--ACGCCGG------GUAGGCCAUCg------CCUG- -5'
19283 5' -60.1 NC_004685.1 + 20989 0.72 0.251151
Target:  5'- uCGACU-CGGCCCGUCCGcUGGUGucGACu -3'
miRNA:   3'- -GCUGAcGCCGGGUAGGCcAUCGC--CUG- -5'
19283 5' -60.1 NC_004685.1 + 18096 0.71 0.268266
Target:  5'- cCGGCUGUcgcggaucaacuacGGCCCGUCCGaGUucagGGCGGugGCa -3'
miRNA:   3'- -GCUGACG--------------CCGGGUAGGC-CA----UCGCC--UG- -5'
19283 5' -60.1 NC_004685.1 + 56542 0.7 0.319227
Target:  5'- uCGACguagGCGGCCC-UCCGcGUcGCccGGGCg -3'
miRNA:   3'- -GCUGa---CGCCGGGuAGGC-CAuCG--CCUG- -5'
19283 5' -60.1 NC_004685.1 + 24582 0.7 0.326749
Target:  5'- gGACgGCGGaCCCGagCGGgcGCcGGACa -3'
miRNA:   3'- gCUGaCGCC-GGGUagGCCauCG-CCUG- -5'
19283 5' -60.1 NC_004685.1 + 1181 0.7 0.334401
Target:  5'- gGACUgGCGGCCCcgCauCGGacUGGCGGGg -3'
miRNA:   3'- gCUGA-CGCCGGGuaG--GCC--AUCGCCUg -5'
19283 5' -60.1 NC_004685.1 + 44731 0.7 0.334401
Target:  5'- cCGugUGCGGCaCCGgcgugccCUGGUGGguCGGACc -3'
miRNA:   3'- -GCugACGCCG-GGUa------GGCCAUC--GCCUG- -5'
19283 5' -60.1 NC_004685.1 + 11740 0.69 0.357328
Target:  5'- gGACUGCGGCaggGUCUGGUgcaucccGGCaaGGACg -3'
miRNA:   3'- gCUGACGCCGgg-UAGGCCA-------UCG--CCUG- -5'
19283 5' -60.1 NC_004685.1 + 49692 0.69 0.358138
Target:  5'- aGACggGUGGCgaaCCA-CCGGgcGCGGGCc -3'
miRNA:   3'- gCUGa-CGCCG---GGUaGGCCauCGCCUG- -5'
19283 5' -60.1 NC_004685.1 + 2904 0.69 0.366308
Target:  5'- gGGCaccCGGCCCcagugCCGGUgcGGCGGGCc -3'
miRNA:   3'- gCUGac-GCCGGGua---GGCCA--UCGCCUG- -5'
19283 5' -60.1 NC_004685.1 + 32277 0.68 0.391579
Target:  5'- uGGC-GCGGgCgGUCCuGGUGGCGcGGCg -3'
miRNA:   3'- gCUGaCGCCgGgUAGG-CCAUCGC-CUG- -5'
19283 5' -60.1 NC_004685.1 + 37270 0.68 0.409045
Target:  5'- gGACUGUucgugccgGGUCCGUUCGGgucGGCGGcCg -3'
miRNA:   3'- gCUGACG--------CCGGGUAGGCCa--UCGCCuG- -5'
19283 5' -60.1 NC_004685.1 + 94 0.68 0.417959
Target:  5'- gGAC-GCGcGCCCGUUggccgcuaggCGGUAGCGG-Cg -3'
miRNA:   3'- gCUGaCGC-CGGGUAG----------GCCAUCGCCuG- -5'
19283 5' -60.1 NC_004685.1 + 2427 0.68 0.42699
Target:  5'- aCGAC-GCGGCCg--CCGGUGGCcuguucGACg -3'
miRNA:   3'- -GCUGaCGCCGGguaGGCCAUCGc-----CUG- -5'
19283 5' -60.1 NC_004685.1 + 39221 0.68 0.436135
Target:  5'- uGGCgGCGGCuUCGgcgCCGGcUGGgGGACg -3'
miRNA:   3'- gCUGaCGCCG-GGUa--GGCC-AUCgCCUG- -5'
19283 5' -60.1 NC_004685.1 + 14716 0.67 0.449126
Target:  5'- aCGGC-GCGGCCCGUgcgcuggagccggcaCUGGUcgaAGCGGcCa -3'
miRNA:   3'- -GCUGaCGCCGGGUA---------------GGCCA---UCGCCuG- -5'
19283 5' -60.1 NC_004685.1 + 23155 0.67 0.449126
Target:  5'- cCGACUGCuGGCCCAgugcuacguccccaUCGGcGGCGG-Cu -3'
miRNA:   3'- -GCUGACG-CCGGGUa-------------GGCCaUCGCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.