Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19283 | 5' | -60.1 | NC_004685.1 | + | 33164 | 0.77 | 0.103995 |
Target: 5'- uCGACaccgGUGGCaCCggCCGGUGGUGGGCg -3' miRNA: 3'- -GCUGa---CGCCG-GGuaGGCCAUCGCCUG- -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 14716 | 0.67 | 0.449126 |
Target: 5'- aCGGC-GCGGCCCGUgcgcuggagccggcaCUGGUcgaAGCGGcCa -3' miRNA: 3'- -GCUGaCGCCGGGUA---------------GGCCA---UCGCCuG- -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 23155 | 0.67 | 0.449126 |
Target: 5'- cCGACUGCuGGCCCAgugcuacguccccaUCGGcGGCGG-Cu -3' miRNA: 3'- -GCUGACG-CCGGGUa-------------GGCCaUCGCCuG- -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 58400 | 0.67 | 0.473804 |
Target: 5'- gCGAUcuUGUcGCCCAucgUCCGGUucAGCGGGa -3' miRNA: 3'- -GCUG--ACGcCGGGU---AGGCCA--UCGCCUg -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 11774 | 0.67 | 0.493242 |
Target: 5'- nCGGCggGCcGCCCAcUCCGGUGGUGa-- -3' miRNA: 3'- -GCUGa-CGcCGGGU-AGGCCAUCGCcug -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 35426 | 0.66 | 0.513037 |
Target: 5'- uCGACUcgGCGGUgCGUCaGGUGGUcGACg -3' miRNA: 3'- -GCUGA--CGCCGgGUAGgCCAUCGcCUG- -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 6503 | 0.66 | 0.53315 |
Target: 5'- aGAUUGUGcacccGCCCGagCCGGUGGUcGACa -3' miRNA: 3'- gCUGACGC-----CGGGUa-GGCCAUCGcCUG- -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 26617 | 0.66 | 0.53924 |
Target: 5'- cCGACgUGUGGCgCAUCUGGggcagccaggccGCGGAg -3' miRNA: 3'- -GCUG-ACGCCGgGUAGGCCau----------CGCCUg -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 44681 | 0.66 | 0.542294 |
Target: 5'- gGGCUaccuggaGCGGCCCc-CCGGgc-CGGACa -3' miRNA: 3'- gCUGA-------CGCCGGGuaGGCCaucGCCUG- -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 2427 | 0.68 | 0.42699 |
Target: 5'- aCGAC-GCGGCCg--CCGGUGGCcuguucGACg -3' miRNA: 3'- -GCUGaCGCCGGguaGGCCAUCGc-----CUG- -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 37270 | 0.68 | 0.409045 |
Target: 5'- gGACUGUucgugccgGGUCCGUUCGGgucGGCGGcCg -3' miRNA: 3'- gCUGACG--------CCGGGUAGGCCa--UCGCCuG- -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 68535 | 0.75 | 0.139476 |
Target: 5'- gGGCUGUGGCCCcggccaGUCCGau-GCGGGCg -3' miRNA: 3'- gCUGACGCCGGG------UAGGCcauCGCCUG- -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 20989 | 0.72 | 0.251151 |
Target: 5'- uCGACU-CGGCCCGUCCGcUGGUGucGACu -3' miRNA: 3'- -GCUGAcGCCGGGUAGGCcAUCGC--CUG- -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 24582 | 0.7 | 0.326749 |
Target: 5'- gGACgGCGGaCCCGagCGGgcGCcGGACa -3' miRNA: 3'- gCUGaCGCC-GGGUagGCCauCG-CCUG- -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 44731 | 0.7 | 0.334401 |
Target: 5'- cCGugUGCGGCaCCGgcgugccCUGGUGGguCGGACc -3' miRNA: 3'- -GCugACGCCG-GGUa------GGCCAUC--GCCUG- -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 11740 | 0.69 | 0.357328 |
Target: 5'- gGACUGCGGCaggGUCUGGUgcaucccGGCaaGGACg -3' miRNA: 3'- gCUGACGCCGgg-UAGGCCA-------UCG--CCUG- -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 49692 | 0.69 | 0.358138 |
Target: 5'- aGACggGUGGCgaaCCA-CCGGgcGCGGGCc -3' miRNA: 3'- gCUGa-CGCCG---GGUaGGCCauCGCCUG- -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 2904 | 0.69 | 0.366308 |
Target: 5'- gGGCaccCGGCCCcagugCCGGUgcGGCGGGCc -3' miRNA: 3'- gCUGac-GCCGGGua---GGCCA--UCGCCUG- -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 32277 | 0.68 | 0.391579 |
Target: 5'- uGGC-GCGGgCgGUCCuGGUGGCGcGGCg -3' miRNA: 3'- gCUGaCGCCgGgUAGG-CCAUCGC-CUG- -5' |
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19283 | 5' | -60.1 | NC_004685.1 | + | 61175 | 1.08 | 0.000581 |
Target: 5'- uCGACUGCGGCCCAUCCGGUAGCGGACc -3' miRNA: 3'- -GCUGACGCCGGGUAGGCCAUCGCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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