miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19286 5' -54.3 NC_004685.1 + 8805 0.66 0.84716
Target:  5'- cGCCGCGGuCGCUGgaccucagCAUGGaggGGUUcgaugUGCg -3'
miRNA:   3'- -CGGCGUU-GUGGCa-------GUACCa--CCAG-----ACG- -5'
19286 5' -54.3 NC_004685.1 + 59246 0.66 0.84716
Target:  5'- uGCCGUuuucgaugAGCgACCGggCGaacGUGGUCUGCa -3'
miRNA:   3'- -CGGCG--------UUG-UGGCa-GUac-CACCAGACG- -5'
19286 5' -54.3 NC_004685.1 + 63701 0.66 0.84716
Target:  5'- aGCUGUAcaGCACC-UCGUuGG-GGUcCUGCg -3'
miRNA:   3'- -CGGCGU--UGUGGcAGUA-CCaCCA-GACG- -5'
19286 5' -54.3 NC_004685.1 + 49483 0.66 0.84716
Target:  5'- cGCCuCGAUcUCGUCGUGGUu-UCUGCg -3'
miRNA:   3'- -CGGcGUUGuGGCAGUACCAccAGACG- -5'
19286 5' -54.3 NC_004685.1 + 51665 0.66 0.838577
Target:  5'- uGCgGCAGCGCC-UCGUcGGUgcccgcggaGGUCaGCa -3'
miRNA:   3'- -CGgCGUUGUGGcAGUA-CCA---------CCAGaCG- -5'
19286 5' -54.3 NC_004685.1 + 15131 0.66 0.829782
Target:  5'- cGUCGgAugGCCGUgCucagGUGGUGGUgCUGg -3'
miRNA:   3'- -CGGCgUugUGGCA-G----UACCACCA-GACg -5'
19286 5' -54.3 NC_004685.1 + 59851 0.66 0.829782
Target:  5'- -aCGCGAuCAgCGUCAUgcGGUaGGUgUGCg -3'
miRNA:   3'- cgGCGUU-GUgGCAGUA--CCA-CCAgACG- -5'
19286 5' -54.3 NC_004685.1 + 61046 0.66 0.829782
Target:  5'- cGCCGCGAUAgCCccacguauccugGUCGUGGUuGUCgggaUGCu -3'
miRNA:   3'- -CGGCGUUGU-GG------------CAGUACCAcCAG----ACG- -5'
19286 5' -54.3 NC_004685.1 + 27401 0.66 0.820785
Target:  5'- aGCCGagacCAUCGUa--GGUGGcCUGCg -3'
miRNA:   3'- -CGGCguu-GUGGCAguaCCACCaGACG- -5'
19286 5' -54.3 NC_004685.1 + 8476 0.67 0.799375
Target:  5'- gGCCGCGcuggccgaggcugaGCGCCG--GUGG-GGUCcGCu -3'
miRNA:   3'- -CGGCGU--------------UGUGGCagUACCaCCAGaCG- -5'
19286 5' -54.3 NC_004685.1 + 37497 0.67 0.798422
Target:  5'- cGCCGUAGC-CCGcguacggcuccaccUCGgagccgaUGGUGGUgccCUGCg -3'
miRNA:   3'- -CGGCGUUGuGGC--------------AGU-------ACCACCA---GACG- -5'
19286 5' -54.3 NC_004685.1 + 18621 0.67 0.782964
Target:  5'- cCCGCGACACCuaCGaGGcGGUCgGCg -3'
miRNA:   3'- cGGCGUUGUGGcaGUaCCaCCAGaCG- -5'
19286 5' -54.3 NC_004685.1 + 48373 0.67 0.773102
Target:  5'- aGCCGaCAGCGCCG--GUGGaGGUgCUGg -3'
miRNA:   3'- -CGGC-GUUGUGGCagUACCaCCA-GACg -5'
19286 5' -54.3 NC_004685.1 + 52558 0.67 0.763098
Target:  5'- gGUCG-AGCACgGUCuUGGUGGagCUGUa -3'
miRNA:   3'- -CGGCgUUGUGgCAGuACCACCa-GACG- -5'
19286 5' -54.3 NC_004685.1 + 38616 0.67 0.751942
Target:  5'- cGCCGCAcccaugucgccgaGCGCUucgcguagGUCAUcGGcgaacgucuUGGUCUGCu -3'
miRNA:   3'- -CGGCGU-------------UGUGG--------CAGUA-CC---------ACCAGACG- -5'
19286 5' -54.3 NC_004685.1 + 58152 0.68 0.742708
Target:  5'- -gCGCAGCGCCGacgCAUGaGcgccGUCUGCg -3'
miRNA:   3'- cgGCGUUGUGGCa--GUAC-Cac--CAGACG- -5'
19286 5' -54.3 NC_004685.1 + 21064 0.68 0.742708
Target:  5'- uGUCGCAGCguccgGCCGUC-----GGUCUGCa -3'
miRNA:   3'- -CGGCGUUG-----UGGCAGuaccaCCAGACG- -5'
19286 5' -54.3 NC_004685.1 + 29987 0.68 0.73961
Target:  5'- cGCCGCGgucgACGCCgGUggcgaccugaucggCAUGGUGGgcgGCa -3'
miRNA:   3'- -CGGCGU----UGUGG-CA--------------GUACCACCagaCG- -5'
19286 5' -54.3 NC_004685.1 + 12043 0.68 0.732345
Target:  5'- cCCGCAGC-CCG-UAUGuaGUGGUCgacgGCa -3'
miRNA:   3'- cGGCGUUGuGGCaGUAC--CACCAGa---CG- -5'
19286 5' -54.3 NC_004685.1 + 52678 0.68 0.731302
Target:  5'- --aGCAGCAgCGugUCGUGGUccaugcagcggcaGGUCUGCc -3'
miRNA:   3'- cggCGUUGUgGC--AGUACCA-------------CCAGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.