miRNA display CGI


Results 1 - 20 of 167 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19291 3' -63.1 NC_004685.1 + 58141 1.09 0.000225
Target:  5'- uGCCCAGCGCAGCGCAGCGCCGACGCAu -3'
miRNA:   3'- -CGGGUCGCGUCGCGUCGCGGCUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 55164 0.87 0.011279
Target:  5'- aGCaCCAGCGCGGCGC-GCGUCGGCGCGu -3'
miRNA:   3'- -CG-GGUCGCGUCGCGuCGCGGCUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 1790 0.8 0.039532
Target:  5'- uGCCCAGUGUucgacggccAGCGCGaCGCCGGCGCGc -3'
miRNA:   3'- -CGGGUCGCG---------UCGCGUcGCGGCUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 65953 0.79 0.047947
Target:  5'- cGCCCAGCGUgacguGGCGCuGCGCCagcccguacucGGCGCGa -3'
miRNA:   3'- -CGGGUCGCG-----UCGCGuCGCGG-----------CUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 63014 0.78 0.052067
Target:  5'- uGCCCGGCGUgGGCGCGGUGUCGACcCAc -3'
miRNA:   3'- -CGGGUCGCG-UCGCGUCGCGGCUGcGU- -5'
19291 3' -63.1 NC_004685.1 + 67119 0.78 0.053515
Target:  5'- cGCUCGGCGCGGCGCAGUGCaGccuggagggcACGCAc -3'
miRNA:   3'- -CGGGUCGCGUCGCGUCGCGgC----------UGCGU- -5'
19291 3' -63.1 NC_004685.1 + 23767 0.77 0.059709
Target:  5'- gGUCCAGCuuGCcGgGCAGCGCCGAgCGCAg -3'
miRNA:   3'- -CGGGUCG--CGuCgCGUCGCGGCU-GCGU- -5'
19291 3' -63.1 NC_004685.1 + 31071 0.77 0.061362
Target:  5'- cGCUCGGCGacaugGGUGCGGCGCuCGACGCc -3'
miRNA:   3'- -CGGGUCGCg----UCGCGUCGCG-GCUGCGu -5'
19291 3' -63.1 NC_004685.1 + 537 0.77 0.061362
Target:  5'- cGCCCGccaGCAGCGCgcgGGUGUCGACGCAc -3'
miRNA:   3'- -CGGGUcg-CGUCGCG---UCGCGGCUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 61220 0.76 0.072254
Target:  5'- cGgCCAGCGCGGcCGCAcccgucuucGCGCCGuACGCGu -3'
miRNA:   3'- -CgGGUCGCGUC-GCGU---------CGCGGC-UGCGU- -5'
19291 3' -63.1 NC_004685.1 + 24484 0.75 0.092133
Target:  5'- gGCUCGGcCGCGGCGUacaGGuCGCCGGCGUg -3'
miRNA:   3'- -CGGGUC-GCGUCGCG---UC-GCGGCUGCGu -5'
19291 3' -63.1 NC_004685.1 + 25873 0.75 0.094639
Target:  5'- gGCCC-GCGCAGguCGgGGCgGCCGACGCu -3'
miRNA:   3'- -CGGGuCGCGUC--GCgUCG-CGGCUGCGu -5'
19291 3' -63.1 NC_004685.1 + 50568 0.74 0.096949
Target:  5'- gGCgCCGGCGCcgccuccAGCGCGGCGUCGAgcugauCGCGa -3'
miRNA:   3'- -CG-GGUCGCG-------UCGCGUCGCGGCU------GCGU- -5'
19291 3' -63.1 NC_004685.1 + 62641 0.74 0.097209
Target:  5'- gGCCCuggcguuGCGCAGCGCGGCgagcagaccgaGCCGauucuccucGCGCAg -3'
miRNA:   3'- -CGGGu------CGCGUCGCGUCG-----------CGGC---------UGCGU- -5'
19291 3' -63.1 NC_004685.1 + 130 0.74 0.099845
Target:  5'- -aCCGGCGCgGGCGCGGCuGCCGGgGUg -3'
miRNA:   3'- cgGGUCGCG-UCGCGUCG-CGGCUgCGu -5'
19291 3' -63.1 NC_004685.1 + 26705 0.74 0.099845
Target:  5'- cGCCCAGCGguGC-UGGaaugaGCCGugGCAg -3'
miRNA:   3'- -CGGGUCGCguCGcGUCg----CGGCugCGU- -5'
19291 3' -63.1 NC_004685.1 + 17101 0.74 0.099845
Target:  5'- gGUCgAGuCGCAGCGguuCGGCGCCGACgGCAa -3'
miRNA:   3'- -CGGgUC-GCGUCGC---GUCGCGGCUG-CGU- -5'
19291 3' -63.1 NC_004685.1 + 66692 0.74 0.102548
Target:  5'- aCCCGcUGUGGCGCA-CGCCGACGCAc -3'
miRNA:   3'- cGGGUcGCGUCGCGUcGCGGCUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 47574 0.74 0.103649
Target:  5'- aGCCaCAGUaucgacgggccgucaGCAGCGCGGCGUCGA-GCAu -3'
miRNA:   3'- -CGG-GUCG---------------CGUCGCGUCGCGGCUgCGU- -5'
19291 3' -63.1 NC_004685.1 + 176 0.74 0.10532
Target:  5'- uGCCCuuGCGCGGCGUGcGCGCggguuuCGGCGCGa -3'
miRNA:   3'- -CGGGu-CGCGUCGCGU-CGCG------GCUGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.