miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19291 3' -63.1 NC_004685.1 + 7792 0.71 0.164496
Target:  5'- aGUgCAGUGgGGUGCGGUaGCUGACGCGg -3'
miRNA:   3'- -CGgGUCGCgUCGCGUCG-CGGCUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 731 0.72 0.137167
Target:  5'- cGCCguGCG-AGCcgaGGUGCCGACGCAg -3'
miRNA:   3'- -CGGguCGCgUCGcg-UCGCGGCUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 32114 0.72 0.142276
Target:  5'- cGCCgCAGCucacaccggGUGGCGCAccgacaccgcugggcGUGCCGACGCAg -3'
miRNA:   3'- -CGG-GUCG---------CGUCGCGU---------------CGCGGCUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 49322 0.72 0.144519
Target:  5'- uGCUCGGcCGCGGCcaGCAGCuCCGACgGCAg -3'
miRNA:   3'- -CGGGUC-GCGUCG--CGUCGcGGCUG-CGU- -5'
19291 3' -63.1 NC_004685.1 + 54862 0.72 0.148329
Target:  5'- cUCCGGCaGCuGCGCAGcCGCCGcCGCc -3'
miRNA:   3'- cGGGUCG-CGuCGCGUC-GCGGCuGCGu -5'
19291 3' -63.1 NC_004685.1 + 25799 0.72 0.152229
Target:  5'- cGCCgGGCaGCGGCGguGgGCCGgucaGCGCc -3'
miRNA:   3'- -CGGgUCG-CGUCGCguCgCGGC----UGCGu -5'
19291 3' -63.1 NC_004685.1 + 9230 0.71 0.160312
Target:  5'- aGgCCAGCGCGGauuggGcCAGCGCCGGgGCc -3'
miRNA:   3'- -CgGGUCGCGUCg----C-GUCGCGGCUgCGu -5'
19291 3' -63.1 NC_004685.1 + 11536 0.71 0.160312
Target:  5'- cGCUCAuGCGuCGGCGCuGCGCUG-CGCu -3'
miRNA:   3'- -CGGGU-CGC-GUCGCGuCGCGGCuGCGu -5'
19291 3' -63.1 NC_004685.1 + 45810 0.71 0.164073
Target:  5'- gGCCCuggagguGGCGCAGCGCAucggcacCGUCGugGCc -3'
miRNA:   3'- -CGGG-------UCGCGUCGCGUc------GCGGCugCGu -5'
19291 3' -63.1 NC_004685.1 + 33752 0.73 0.126781
Target:  5'- uGCCCGGCGagacGUGguGCGUCGuCGCGg -3'
miRNA:   3'- -CGGGUCGCgu--CGCguCGCGGCuGCGU- -5'
19291 3' -63.1 NC_004685.1 + 14063 0.73 0.120267
Target:  5'- cGCCC-GCG-AGCGCGGCuucgGCCGAgGCAu -3'
miRNA:   3'- -CGGGuCGCgUCGCGUCG----CGGCUgCGU- -5'
19291 3' -63.1 NC_004685.1 + 53352 0.74 0.114065
Target:  5'- cUCCAGCGCGGCGCcgguggccGCGgCGAUGCu -3'
miRNA:   3'- cGGGUCGCGUCGCGu-------CGCgGCUGCGu -5'
19291 3' -63.1 NC_004685.1 + 65953 0.79 0.047947
Target:  5'- cGCCCAGCGUgacguGGCGCuGCGCCagcccguacucGGCGCGa -3'
miRNA:   3'- -CGGGUCGCG-----UCGCGuCGCGG-----------CUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 63014 0.78 0.052067
Target:  5'- uGCCCGGCGUgGGCGCGGUGUCGACcCAc -3'
miRNA:   3'- -CGGGUCGCG-UCGCGUCGCGGCUGcGU- -5'
19291 3' -63.1 NC_004685.1 + 67119 0.78 0.053515
Target:  5'- cGCUCGGCGCGGCGCAGUGCaGccuggagggcACGCAc -3'
miRNA:   3'- -CGGGUCGCGUCGCGUCGCGgC----------UGCGU- -5'
19291 3' -63.1 NC_004685.1 + 31071 0.77 0.061362
Target:  5'- cGCUCGGCGacaugGGUGCGGCGCuCGACGCc -3'
miRNA:   3'- -CGGGUCGCg----UCGCGUCGCG-GCUGCGu -5'
19291 3' -63.1 NC_004685.1 + 537 0.77 0.061362
Target:  5'- cGCCCGccaGCAGCGCgcgGGUGUCGACGCAc -3'
miRNA:   3'- -CGGGUcg-CGUCGCG---UCGCGGCUGCGU- -5'
19291 3' -63.1 NC_004685.1 + 62641 0.74 0.097209
Target:  5'- gGCCCuggcguuGCGCAGCGCGGCgagcagaccgaGCCGauucuccucGCGCAg -3'
miRNA:   3'- -CGGGu------CGCGUCGCGUCG-----------CGGC---------UGCGU- -5'
19291 3' -63.1 NC_004685.1 + 2965 0.74 0.10532
Target:  5'- cGCaCCAGCGUucgguccagauGGCGCGGuCGUCGGCGUg -3'
miRNA:   3'- -CG-GGUCGCG-----------UCGCGUC-GCGGCUGCGu -5'
19291 3' -63.1 NC_004685.1 + 58604 0.74 0.111077
Target:  5'- cGCCCGuUGCuGCGCAGUGUCGcCGCGg -3'
miRNA:   3'- -CGGGUcGCGuCGCGUCGCGGCuGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.