miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19297 5' -52.5 NC_004685.1 + 12943 0.66 0.905315
Target:  5'- aGGGUgaGGUCGUcaGGAGCGAuccucucgccuGGGCAGCg -3'
miRNA:   3'- cCUCG--CCAGUA--CCUUGCU-----------CUUGUCGa -5'
19297 5' -52.5 NC_004685.1 + 11610 0.66 0.89849
Target:  5'- aGGGCGG-CGUGGAGCGcAGc-CGGUg -3'
miRNA:   3'- cCUCGCCaGUACCUUGC-UCuuGUCGa -5'
19297 5' -52.5 NC_004685.1 + 25855 0.67 0.876424
Target:  5'- --uGCGG-CAUGaGcAGCGAGAugGGCg -3'
miRNA:   3'- ccuCGCCaGUAC-C-UUGCUCUugUCGa -5'
19297 5' -52.5 NC_004685.1 + 57136 0.67 0.876424
Target:  5'- uGGucGGCGGUgGUGGAccgcACGGu-GCAGCa -3'
miRNA:   3'- -CC--UCGCCAgUACCU----UGCUcuUGUCGa -5'
19297 5' -52.5 NC_004685.1 + 36503 0.67 0.868555
Target:  5'- --cGC-GUCGUGGAcCGAGAcCAGCg -3'
miRNA:   3'- ccuCGcCAGUACCUuGCUCUuGUCGa -5'
19297 5' -52.5 NC_004685.1 + 27544 0.67 0.860439
Target:  5'- -aGGCGGUCAUGGccgcAGCGGGuuccGgGGCg -3'
miRNA:   3'- ccUCGCCAGUACC----UUGCUCu---UgUCGa -5'
19297 5' -52.5 NC_004685.1 + 40329 0.67 0.860439
Target:  5'- uGGAGUGGUgugacgccgagUAcGGGGCGGGGcGCGGCa -3'
miRNA:   3'- -CCUCGCCA-----------GUaCCUUGCUCU-UGUCGa -5'
19297 5' -52.5 NC_004685.1 + 11917 0.68 0.834689
Target:  5'- cGAGCGGuUCAUGGcccaGAUGcAGGAUGGCc -3'
miRNA:   3'- cCUCGCC-AGUACC----UUGC-UCUUGUCGa -5'
19297 5' -52.5 NC_004685.1 + 60106 0.68 0.81644
Target:  5'- aGGGGUaugacgcaucuGGUCAUGGAacuccauuGCGGGGcGCGGCc -3'
miRNA:   3'- -CCUCG-----------CCAGUACCU--------UGCUCU-UGUCGa -5'
19297 5' -52.5 NC_004685.1 + 39592 0.68 0.807019
Target:  5'- gGGAGCGGUCgAUGccuAGCG-GAcugcGCGGCUa -3'
miRNA:   3'- -CCUCGCCAG-UACc--UUGCuCU----UGUCGA- -5'
19297 5' -52.5 NC_004685.1 + 2910 0.68 0.787635
Target:  5'- cGGuGUGGcCAUGccggcccgagguGAGCGAGAuCAGCUa -3'
miRNA:   3'- -CCuCGCCaGUAC------------CUUGCUCUuGUCGA- -5'
19297 5' -52.5 NC_004685.1 + 26943 0.69 0.777694
Target:  5'- gGGGGUGcagggugugcacGUCGcGGAACGAGGugGCGGCg -3'
miRNA:   3'- -CCUCGC------------CAGUaCCUUGCUCU--UGUCGa -5'
19297 5' -52.5 NC_004685.1 + 9283 0.7 0.719555
Target:  5'- uGGAGCGGggCAUGaGcGACGcagacacugcacggaAGAACGGCUg -3'
miRNA:   3'- -CCUCGCCa-GUAC-C-UUGC---------------UCUUGUCGA- -5'
19297 5' -52.5 NC_004685.1 + 32282 0.7 0.682795
Target:  5'- cGGGCGGUCcugGUGGcGCGGcGAccGCAGCg -3'
miRNA:   3'- cCUCGCCAG---UACCuUGCU-CU--UGUCGa -5'
19297 5' -52.5 NC_004685.1 + 13471 0.71 0.671858
Target:  5'- aGGAGCGccgaGcCAaGGAACG-GAGCAGCa -3'
miRNA:   3'- -CCUCGC----CaGUaCCUUGCuCUUGUCGa -5'
19297 5' -52.5 NC_004685.1 + 47291 0.71 0.638861
Target:  5'- cGGAGCGGUggcguguggcCGaGGAGCGAgccacugacuacGAGCGGCg -3'
miRNA:   3'- -CCUCGCCA----------GUaCCUUGCU------------CUUGUCGa -5'
19297 5' -52.5 NC_004685.1 + 63088 0.71 0.638861
Target:  5'- -cGGCGGUUcgGGAACGuccGAACuGCUc -3'
miRNA:   3'- ccUCGCCAGuaCCUUGCu--CUUGuCGA- -5'
19297 5' -52.5 NC_004685.1 + 45051 0.71 0.627837
Target:  5'- -aGGCGGUCAccUGGGgcaacccgaaccGCGAGGugGGCg -3'
miRNA:   3'- ccUCGCCAGU--ACCU------------UGCUCUugUCGa -5'
19297 5' -52.5 NC_004685.1 + 2455 0.71 0.627837
Target:  5'- cGGcGCGGUCcaacaugccGGAGCcaGAGAACAGCg -3'
miRNA:   3'- -CCuCGCCAGua-------CCUUG--CUCUUGUCGa -5'
19297 5' -52.5 NC_004685.1 + 12358 0.72 0.594824
Target:  5'- cGAcGCGG-CAgagGGAACGGGAACuGCUc -3'
miRNA:   3'- cCU-CGCCaGUa--CCUUGCUCUUGuCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.