miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19298 3' -53.3 NC_004685.1 + 13449 0.66 0.900692
Target:  5'- gUGAAGGAGauUCgGGAGCUGGaggagCGCCGa -3'
miRNA:   3'- aGCUUCCUC--AG-CUUCGGCUa----GUGGCg -5'
19298 3' -53.3 NC_004685.1 + 48707 0.66 0.900692
Target:  5'- aCGGgccGAGUCGAugaAGUCGAUgACCGg -3'
miRNA:   3'- aGCUuc-CUCAGCU---UCGGCUAgUGGCg -5'
19298 3' -53.3 NC_004685.1 + 12328 0.66 0.900692
Target:  5'- gUCGGGuGGuGUCcAAGCUGgAUCACCaGCc -3'
miRNA:   3'- -AGCUU-CCuCAGcUUCGGC-UAGUGG-CG- -5'
19298 3' -53.3 NC_004685.1 + 20523 0.66 0.896582
Target:  5'- gUUGGAGGAGguggCGcaggagcuguauagcAAGCCGAUCAgCa- -3'
miRNA:   3'- -AGCUUCCUCa---GC---------------UUCGGCUAGUgGcg -5'
19298 3' -53.3 NC_004685.1 + 18797 0.66 0.893791
Target:  5'- aUCGAGcaGGUCauGGCCGAccUCACCGg -3'
miRNA:   3'- -AGCUUccUCAGcuUCGGCU--AGUGGCg -5'
19298 3' -53.3 NC_004685.1 + 37324 0.66 0.893791
Target:  5'- gCGcAGGGccUCGguGCCGAgaUCAUCGCg -3'
miRNA:   3'- aGC-UUCCucAGCuuCGGCU--AGUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 10648 0.66 0.893791
Target:  5'- uUCGAGGGuga-GggGCUGgAUCGUCGCg -3'
miRNA:   3'- -AGCUUCCucagCuuCGGC-UAGUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 31215 0.66 0.893791
Target:  5'- gUGAAGGAGUCGuugauuucggacAGGuuGAagUUggACCGCu -3'
miRNA:   3'- aGCUUCCUCAGC------------UUCggCU--AG--UGGCG- -5'
19298 3' -53.3 NC_004685.1 + 30865 0.66 0.888807
Target:  5'- uUCGcgccGAGGAGUCgcgcaagaacuaccuGAagcucgcGGCCGAgggCACUGCa -3'
miRNA:   3'- -AGC----UUCCUCAG---------------CU-------UCGGCUa--GUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 64164 0.66 0.886632
Target:  5'- gUCGGAGGGGcCGAGuUCGAcuuggcggUGCCGCg -3'
miRNA:   3'- -AGCUUCCUCaGCUUcGGCUa-------GUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 6639 0.66 0.884435
Target:  5'- gUCGAGaccuGGAa--GAGGCCGGUCuggugugggucgacACCGCg -3'
miRNA:   3'- -AGCUU----CCUcagCUUCGGCUAG--------------UGGCG- -5'
19298 3' -53.3 NC_004685.1 + 16134 0.66 0.87922
Target:  5'- aCGGuccccuGGAGUCG--GCCG--CGCCGCg -3'
miRNA:   3'- aGCUu-----CCUCAGCuuCGGCuaGUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 10066 0.66 0.87922
Target:  5'- cCG-AGGAGgCGGucGCCGAgauUCGCCGg -3'
miRNA:   3'- aGCuUCCUCaGCUu-CGGCU---AGUGGCg -5'
19298 3' -53.3 NC_004685.1 + 25607 0.66 0.87922
Target:  5'- gCGAc-GcGUCGAAGCCGAgguacuuggugaUgGCCGCg -3'
miRNA:   3'- aGCUucCuCAGCUUCGGCU------------AgUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 62812 0.66 0.87922
Target:  5'- cCGggGGAacCGggGCCGGcugaGCCGg -3'
miRNA:   3'- aGCuuCCUcaGCuuCGGCUag--UGGCg -5'
19298 3' -53.3 NC_004685.1 + 50078 0.66 0.87922
Target:  5'- cCGAGGGA--CGAAuGCCcuGAUCACCagGCg -3'
miRNA:   3'- aGCUUCCUcaGCUU-CGG--CUAGUGG--CG- -5'
19298 3' -53.3 NC_004685.1 + 55972 0.66 0.87922
Target:  5'- uUCGGAacuuUCGAAGCCc-UCACCGCa -3'
miRNA:   3'- -AGCUUccucAGCUUCGGcuAGUGGCG- -5'
19298 3' -53.3 NC_004685.1 + 64867 0.66 0.87922
Target:  5'- cCGAAGGuAGUCGuucAGgCGAUCAaggGCa -3'
miRNA:   3'- aGCUUCC-UCAGCu--UCgGCUAGUgg-CG- -5'
19298 3' -53.3 NC_004685.1 + 18903 0.66 0.871561
Target:  5'- gCGAGGGuGaCGAAGCCagggacauGAUgGCCGa -3'
miRNA:   3'- aGCUUCCuCaGCUUCGG--------CUAgUGGCg -5'
19298 3' -53.3 NC_004685.1 + 14503 0.66 0.871561
Target:  5'- gCGAccguGGuGUUGAcgcGCCGAcgcgCGCCGCg -3'
miRNA:   3'- aGCUu---CCuCAGCUu--CGGCUa---GUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.