miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19352 5' -60.4 NC_004685.1 + 14360 0.66 0.473576
Target:  5'- -gAGcGGCUGaugcGGGCCGCugGCCGCaacuaUUUCg -3'
miRNA:   3'- agUC-CCGAC----CCCGGCG--UGGUGg----AAAG- -5'
19352 5' -60.4 NC_004685.1 + 63246 0.66 0.470662
Target:  5'- --cGGGCUGuucGGGCCaggugaugcccuugGCGCCGCCg--- -3'
miRNA:   3'- aguCCCGAC---CCCGG--------------CGUGGUGGaaag -5'
19352 5' -60.4 NC_004685.1 + 51038 0.66 0.463899
Target:  5'- gUCAGGaCcGGGGCCGCACacuUCUaUCc -3'
miRNA:   3'- -AGUCCcGaCCCCGGCGUGgu-GGAaAG- -5'
19352 5' -60.4 NC_004685.1 + 29489 0.66 0.454325
Target:  5'- -uGGGGUUGaGGaaguacgacuGCUGCACCGCCgcgUCc -3'
miRNA:   3'- agUCCCGAC-CC----------CGGCGUGGUGGaa-AG- -5'
19352 5' -60.4 NC_004685.1 + 9781 0.66 0.454325
Target:  5'- -gAGcGGCUGGGGuucgccuaCCGCGgCCGCCg--- -3'
miRNA:   3'- agUC-CCGACCCC--------GGCGU-GGUGGaaag -5'
19352 5' -60.4 NC_004685.1 + 39444 0.67 0.417147
Target:  5'- aCGGcGGCaaGGGCCGCGCCuggguCCagUUCc -3'
miRNA:   3'- aGUC-CCGacCCCGGCGUGGu----GGa-AAG- -5'
19352 5' -60.4 NC_004685.1 + 30702 0.67 0.417147
Target:  5'- cUCGGGGUcGcGGuaCGCGCCGCCg--- -3'
miRNA:   3'- -AGUCCCGaC-CCcgGCGUGGUGGaaag -5'
19352 5' -60.4 NC_004685.1 + 37218 0.67 0.408146
Target:  5'- gCAGcGCcGGGGCCGCGCCgAUgaUUCc -3'
miRNA:   3'- aGUCcCGaCCCCGGCGUGG-UGgaAAG- -5'
19352 5' -60.4 NC_004685.1 + 38302 0.67 0.408146
Target:  5'- cCAGGGCcaGGGCCGUACgaGCCa--- -3'
miRNA:   3'- aGUCCCGacCCCGGCGUGg-UGGaaag -5'
19352 5' -60.4 NC_004685.1 + 63094 0.68 0.390512
Target:  5'- gUCAGGuucGCUGGGGUCGCGCuCGUCg--- -3'
miRNA:   3'- -AGUCC---CGACCCCGGCGUG-GUGGaaag -5'
19352 5' -60.4 NC_004685.1 + 37598 0.68 0.381884
Target:  5'- uUCGGGGUgcccgGGGGaacCUGC-CCGCCggUCa -3'
miRNA:   3'- -AGUCCCGa----CCCC---GGCGuGGUGGaaAG- -5'
19352 5' -60.4 NC_004685.1 + 39550 0.68 0.373384
Target:  5'- cCGGGGCUGccGGGCCGaguGCgGCCg--- -3'
miRNA:   3'- aGUCCCGAC--CCCGGCg--UGgUGGaaag -5'
19352 5' -60.4 NC_004685.1 + 3237 0.68 0.373384
Target:  5'- gUCGGGGUc-GGGCCGgACCAUCg--- -3'
miRNA:   3'- -AGUCCCGacCCCGGCgUGGUGGaaag -5'
19352 5' -60.4 NC_004685.1 + 11130 0.68 0.348665
Target:  5'- cCuGGGCgcGGuGGCCGaCGCCACCa--- -3'
miRNA:   3'- aGuCCCGa-CC-CCGGC-GUGGUGGaaag -5'
19352 5' -60.4 NC_004685.1 + 17979 0.68 0.348665
Target:  5'- aUCGcGGGCcggcagUGGcuGCCGCACCACCgcaUCg -3'
miRNA:   3'- -AGU-CCCG------ACCc-CGGCGUGGUGGaa-AG- -5'
19352 5' -60.4 NC_004685.1 + 68356 0.69 0.340688
Target:  5'- aUCAGGGCUucGcGGaCGCACCGCCg--- -3'
miRNA:   3'- -AGUCCCGA--CcCCgGCGUGGUGGaaag -5'
19352 5' -60.4 NC_004685.1 + 10675 0.69 0.340688
Target:  5'- gUCGuGuGGC-GGGGCgCGCACUACCagUCg -3'
miRNA:   3'- -AGU-C-CCGaCCCCG-GCGUGGUGGaaAG- -5'
19352 5' -60.4 NC_004685.1 + 9806 0.69 0.325135
Target:  5'- gCuGGcGCUGaGGGCaCGCugCGCCgggUUCu -3'
miRNA:   3'- aGuCC-CGAC-CCCG-GCGugGUGGa--AAG- -5'
19352 5' -60.4 NC_004685.1 + 38570 0.69 0.317558
Target:  5'- ---cGGCUGGGGCaucgcggGCAUCACCgagUUCu -3'
miRNA:   3'- agucCCGACCCCGg------CGUGGUGGa--AAG- -5'
19352 5' -60.4 NC_004685.1 + 11425 0.7 0.268251
Target:  5'- aCAGGGCUGGGGUUuCACUgucucaGCCcugUUCg -3'
miRNA:   3'- aGUCCCGACCCCGGcGUGG------UGGa--AAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.