miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19383 3' -56.2 NC_004685.1 + 23288 0.66 0.725493
Target:  5'- -aCGGCGaUCAc-GCCCGCGGccacGCCGAGa -3'
miRNA:   3'- uaGUUGC-AGUcaCGGGUGCU----CGGCUC- -5'
19383 3' -56.2 NC_004685.1 + 65593 0.66 0.725493
Target:  5'- uGUCGGCaUCAGcGgCCACaGGGCCGAu -3'
miRNA:   3'- -UAGUUGcAGUCaCgGGUG-CUCGGCUc -5'
19383 3' -56.2 NC_004685.1 + 51674 0.66 0.725493
Target:  5'- -gCcuCGUCGGUGCCCGCGgaGGUCa-- -3'
miRNA:   3'- uaGuuGCAGUCACGGGUGC--UCGGcuc -5'
19383 3' -56.2 NC_004685.1 + 48887 0.66 0.72235
Target:  5'- cUCGACcUCGGUG-CCGCGGggcugccgcgcaucGCCGAGa -3'
miRNA:   3'- uAGUUGcAGUCACgGGUGCU--------------CGGCUC- -5'
19383 3' -56.2 NC_004685.1 + 40860 0.66 0.714988
Target:  5'- -gCAGCG-CGGUGCUggcguCGCGGGCCGc- -3'
miRNA:   3'- uaGUUGCaGUCACGG-----GUGCUCGGCuc -5'
19383 3' -56.2 NC_004685.1 + 17627 0.66 0.693752
Target:  5'- -aCGACGU-GGUGUUCAuCGAGaCCGAGa -3'
miRNA:   3'- uaGUUGCAgUCACGGGU-GCUC-GGCUC- -5'
19383 3' -56.2 NC_004685.1 + 3923 0.66 0.693752
Target:  5'- -aCAACGUCcuGUGCCCGguucacaaccCGAGCaGGGa -3'
miRNA:   3'- uaGUUGCAGu-CACGGGU----------GCUCGgCUC- -5'
19383 3' -56.2 NC_004685.1 + 33104 0.66 0.680894
Target:  5'- cUCGGCGUCGGccagguugaucgGaCCCGCGucGCCGGGc -3'
miRNA:   3'- uAGUUGCAGUCa-----------C-GGGUGCu-CGGCUC- -5'
19383 3' -56.2 NC_004685.1 + 14038 0.67 0.665812
Target:  5'- -cCAACGgcagccgcauccuguUCGGcGCCCGCGAgcgcggcuucgGCCGAGg -3'
miRNA:   3'- uaGUUGC---------------AGUCaCGGGUGCU-----------CGGCUC- -5'
19383 3' -56.2 NC_004685.1 + 39100 0.67 0.661491
Target:  5'- --aGAUGUCAGUGuugaacggcgaaCCCAgUGAGCUGAGa -3'
miRNA:   3'- uagUUGCAGUCAC------------GGGU-GCUCGGCUC- -5'
19383 3' -56.2 NC_004685.1 + 16235 0.67 0.65067
Target:  5'- cUCGGCGUCGaacgcagGCUCAgCGAGaCCGAGg -3'
miRNA:   3'- uAGUUGCAGUca-----CGGGU-GCUC-GGCUC- -5'
19383 3' -56.2 NC_004685.1 + 58061 0.67 0.65067
Target:  5'- ---uGCGUguGUGCCCGCGAcaaaCGAGu -3'
miRNA:   3'- uaguUGCAguCACGGGUGCUcg--GCUC- -5'
19383 3' -56.2 NC_004685.1 + 56196 0.67 0.639833
Target:  5'- -gCAAUGUCAG-GCCCAUaGGCCa-- -3'
miRNA:   3'- uaGUUGCAGUCaCGGGUGcUCGGcuc -5'
19383 3' -56.2 NC_004685.1 + 64302 0.67 0.639833
Target:  5'- -gUggUGUCGGUGUcagCCAacaccCGGGCCGAGg -3'
miRNA:   3'- uaGuuGCAGUCACG---GGU-----GCUCGGCUC- -5'
19383 3' -56.2 NC_004685.1 + 35239 0.67 0.618149
Target:  5'- -gCAACGg-GGUGCCCGCG-GCCa-- -3'
miRNA:   3'- uaGUUGCagUCACGGGUGCuCGGcuc -5'
19383 3' -56.2 NC_004685.1 + 56636 0.67 0.618149
Target:  5'- gAUUGGCGUCA--GCCCACGcgucuGCCGAu -3'
miRNA:   3'- -UAGUUGCAGUcaCGGGUGCu----CGGCUc -5'
19383 3' -56.2 NC_004685.1 + 57007 0.68 0.607319
Target:  5'- --gAACGUCacGGcGCCCuGCGGGCCGAc -3'
miRNA:   3'- uagUUGCAG--UCaCGGG-UGCUCGGCUc -5'
19383 3' -56.2 NC_004685.1 + 21498 0.68 0.564294
Target:  5'- cGUC-ACGcCGGagacggugcUGCCCgACGAGCCGGGc -3'
miRNA:   3'- -UAGuUGCaGUC---------ACGGG-UGCUCGGCUC- -5'
19383 3' -56.2 NC_004685.1 + 44338 0.69 0.532554
Target:  5'- gGUCGACG-CGGUGgCCGCGA-UCGGGg -3'
miRNA:   3'- -UAGUUGCaGUCACgGGUGCUcGGCUC- -5'
19383 3' -56.2 NC_004685.1 + 38840 0.7 0.441925
Target:  5'- uUCGGCugccgcgccgGUCGGUGCCCGCGGuGCCa-- -3'
miRNA:   3'- uAGUUG----------CAGUCACGGGUGCU-CGGcuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.