miRNA display CGI


Results 21 - 40 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19384 3' -59.7 NC_004685.1 + 21652 0.66 0.549775
Target:  5'- cCGaCGGUggGCCguACAgCCCCGugGAGGu -3'
miRNA:   3'- -GC-GUCGa-CGG--UGUgGGGGCugUUCCc -5'
19384 3' -59.7 NC_004685.1 + 23933 0.66 0.539558
Target:  5'- gCGCAGCgaacaCGCGCCgCCCGGCGAc-- -3'
miRNA:   3'- -GCGUCGacg--GUGUGG-GGGCUGUUccc -5'
19384 3' -59.7 NC_004685.1 + 25702 0.69 0.379711
Target:  5'- --aGGCUGUCACGCUCCC-ACGGcGGGa -3'
miRNA:   3'- gcgUCGACGGUGUGGGGGcUGUU-CCC- -5'
19384 3' -59.7 NC_004685.1 + 25928 0.67 0.518321
Target:  5'- gGCGGgUGCCcgacucgAUGCCCCCaguccgaGCGGGGGa -3'
miRNA:   3'- gCGUCgACGG-------UGUGGGGGc------UGUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 26464 0.68 0.451176
Target:  5'- uGguGCUGCC-CGCCUCCacccAgAAGGGc -3'
miRNA:   3'- gCguCGACGGuGUGGGGGc---UgUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 28387 0.71 0.304537
Target:  5'- uCGCuGCgucgGCCACACCUCCGGugaccgucuucgaucCAAGGu -3'
miRNA:   3'- -GCGuCGa---CGGUGUGGGGGCU---------------GUUCCc -5'
19384 3' -59.7 NC_004685.1 + 28651 0.73 0.219496
Target:  5'- uCGCAGCaa-CACAUCCCUGACGcGGGc -3'
miRNA:   3'- -GCGUCGacgGUGUGGGGGCUGUuCCC- -5'
19384 3' -59.7 NC_004685.1 + 29587 0.71 0.287623
Target:  5'- uCGCcGUUGgC-CACCCCCGACAcgaacugaucgAGGGu -3'
miRNA:   3'- -GCGuCGACgGuGUGGGGGCUGU-----------UCCC- -5'
19384 3' -59.7 NC_004685.1 + 30123 0.66 0.549775
Target:  5'- gGCAGUgucgcgGCCGCACUcggCCCGGCAGc-- -3'
miRNA:   3'- gCGUCGa-----CGGUGUGG---GGGCUGUUccc -5'
19384 3' -59.7 NC_004685.1 + 31821 0.66 0.529406
Target:  5'- aCGCGGCUGgCugACgCUCCGACGc--- -3'
miRNA:   3'- -GCGUCGACgGugUG-GGGGCUGUuccc -5'
19384 3' -59.7 NC_004685.1 + 34078 0.7 0.316231
Target:  5'- uCGCGGCUggGCCugGCuCCaCCGACAuGGu -3'
miRNA:   3'- -GCGUCGA--CGGugUG-GG-GGCUGUuCCc -5'
19384 3' -59.7 NC_004685.1 + 34945 0.68 0.43261
Target:  5'- uCGCAGUUGCCcuuCACCUUcagCGugGAGGu -3'
miRNA:   3'- -GCGUCGACGGu--GUGGGG---GCugUUCCc -5'
19384 3' -59.7 NC_004685.1 + 35558 0.72 0.236586
Target:  5'- gCGCAGCUGCaC-CACCugCCCGcgcucCAGGGGg -3'
miRNA:   3'- -GCGUCGACG-GuGUGG--GGGCu----GUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 35694 0.66 0.549775
Target:  5'- aCGCGGC-GCaGCAUCCCCGACu---- -3'
miRNA:   3'- -GCGUCGaCGgUGUGGGGGCUGuuccc -5'
19384 3' -59.7 NC_004685.1 + 35963 0.69 0.388223
Target:  5'- cCGCaacGGCgagGUgUACACCCUCGGCAAGGa -3'
miRNA:   3'- -GCG---UCGa--CG-GUGUGGGGGCUGUUCCc -5'
19384 3' -59.7 NC_004685.1 + 36370 0.72 0.254777
Target:  5'- uCGCGGUcGCCGCGCCCgaCGGCGgccuGGGc -3'
miRNA:   3'- -GCGUCGaCGGUGUGGGg-GCUGUu---CCC- -5'
19384 3' -59.7 NC_004685.1 + 37829 0.66 0.546703
Target:  5'- uGCGGCUGCUgcgacugcugcggcGCauaGCCCUgCGGCAGcGGGa -3'
miRNA:   3'- gCGUCGACGG--------------UG---UGGGG-GCUGUU-CCC- -5'
19384 3' -59.7 NC_004685.1 + 39446 0.73 0.230769
Target:  5'- gGCGGCaaggGCCGCGCCUggguccaguuCCGGCAAGaGGu -3'
miRNA:   3'- gCGUCGa---CGGUGUGGG----------GGCUGUUC-CC- -5'
19384 3' -59.7 NC_004685.1 + 39514 0.66 0.539558
Target:  5'- uCGCAGCgauaGCCGguCCCgCGAUAccugcgauggccGGGGc -3'
miRNA:   3'- -GCGUCGa---CGGUguGGGgGCUGU------------UCCC- -5'
19384 3' -59.7 NC_004685.1 + 41562 0.67 0.499398
Target:  5'- uCGaCGGCUGCgguggGCGCCCCCacgGugGAGGu -3'
miRNA:   3'- -GC-GUCGACGg----UGUGGGGG---CugUUCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.