miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19384 3' -59.7 NC_004685.1 + 777 0.69 0.371325
Target:  5'- aGCAGCgGCCugAUCCUCGGCGGu-- -3'
miRNA:   3'- gCGUCGaCGGugUGGGGGCUGUUccc -5'
19384 3' -59.7 NC_004685.1 + 4411 1.1 0.000453
Target:  5'- aCGCAGCUGCCACACCCCCGACAAGGGu -3'
miRNA:   3'- -GCGUCGACGGUGUGGGGGCUGUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 4711 0.67 0.50932
Target:  5'- uGCGGCUacGCgAuCAUCCCgGcCGAGGGg -3'
miRNA:   3'- gCGUCGA--CGgU-GUGGGGgCuGUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 5717 0.69 0.379711
Target:  5'- aCGCGGgUGCCAguCaCCCCGACAc--- -3'
miRNA:   3'- -GCGUCgACGGUguG-GGGGCUGUuccc -5'
19384 3' -59.7 NC_004685.1 + 8033 0.67 0.479818
Target:  5'- gGCgacgGGCUGUacguCACCCgCGACAgcuGGGGg -3'
miRNA:   3'- gCG----UCGACGgu--GUGGGgGCUGU---UCCC- -5'
19384 3' -59.7 NC_004685.1 + 9170 0.67 0.50932
Target:  5'- uGaCGGgUGUUcagguuccgaACACCCCCGACGaugauGGGGg -3'
miRNA:   3'- gC-GUCgACGG----------UGUGGGGGCUGU-----UCCC- -5'
19384 3' -59.7 NC_004685.1 + 9782 0.66 0.549775
Target:  5'- aGCGGCUGggguucgccuaCCGCgGCCgCCgCGGCGAGGu -3'
miRNA:   3'- gCGUCGAC-----------GGUG-UGG-GG-GCUGUUCCc -5'
19384 3' -59.7 NC_004685.1 + 10984 0.66 0.57038
Target:  5'- cCGUcgaAGCUGCCGCcggagUUCCUGcGCAAGGGc -3'
miRNA:   3'- -GCG---UCGACGGUGu----GGGGGC-UGUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 12192 0.68 0.459672
Target:  5'- uGUGGCagGCCACGCCgCCGGacuacuuCAAGGa -3'
miRNA:   3'- gCGUCGa-CGGUGUGGgGGCU-------GUUCCc -5'
19384 3' -59.7 NC_004685.1 + 12443 0.76 0.141524
Target:  5'- gGCGGCaGCCcuGCGCCCCUGggucgacaACGAGGGg -3'
miRNA:   3'- gCGUCGaCGG--UGUGGGGGC--------UGUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 12867 0.7 0.31549
Target:  5'- cCGCAGCUcucGCCGCccaauccgcugcuGCCCUCGuCGAGcGGg -3'
miRNA:   3'- -GCGUCGA---CGGUG-------------UGGGGGCuGUUC-CC- -5'
19384 3' -59.7 NC_004685.1 + 13145 0.67 0.489562
Target:  5'- aCGCGGaggGCCGCcuacgucgauaGCCCCCccuauGACAucguGGGGg -3'
miRNA:   3'- -GCGUCga-CGGUG-----------UGGGGG-----CUGU----UCCC- -5'
19384 3' -59.7 NC_004685.1 + 13351 0.66 0.549775
Target:  5'- uGCAGCUGCUguACGCCaUCCGcaACAAGc- -3'
miRNA:   3'- gCGUCGACGG--UGUGG-GGGC--UGUUCcc -5'
19384 3' -59.7 NC_004685.1 + 13511 0.72 0.254777
Target:  5'- uGCAGC-GCCGgGaccgCCCCGACGAGGc -3'
miRNA:   3'- gCGUCGaCGGUgUg---GGGGCUGUUCCc -5'
19384 3' -59.7 NC_004685.1 + 14015 0.67 0.519325
Target:  5'- gGcCAGC-GUCGCACCCUCGcaGCGcGGGa -3'
miRNA:   3'- gC-GUCGaCGGUGUGGGGGC--UGUuCCC- -5'
19384 3' -59.7 NC_004685.1 + 16758 0.67 0.50932
Target:  5'- aGCAGCUGUccgaggcgauCACugCCaaGGCGcAGGGc -3'
miRNA:   3'- gCGUCGACG----------GUGugGGggCUGU-UCCC- -5'
19384 3' -59.7 NC_004685.1 + 17526 0.66 0.560051
Target:  5'- cCGUGGCgugGCgACGCCCCUGGuCcAGGu -3'
miRNA:   3'- -GCGUCGa--CGgUGUGGGGGCU-GuUCCc -5'
19384 3' -59.7 NC_004685.1 + 17992 0.71 0.300951
Target:  5'- aGUGGCUGCCGCACCaCCgcaucggCGACgAAGGc -3'
miRNA:   3'- gCGUCGACGGUGUGG-GG-------GCUG-UUCCc -5'
19384 3' -59.7 NC_004685.1 + 19637 0.67 0.499398
Target:  5'- aGgAGCUGCgCAagGCUCgUGACGAGGGc -3'
miRNA:   3'- gCgUCGACG-GUg-UGGGgGCUGUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 21383 0.69 0.405618
Target:  5'- gGCGGgUGCCguguACACCgCgGugAAGGGc -3'
miRNA:   3'- gCGUCgACGG----UGUGGgGgCugUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.