miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19384 3' -59.7 NC_004685.1 + 58615 0.66 0.539558
Target:  5'- gCGCAGUgucGCCGCGgCCaCCGACAu--- -3'
miRNA:   3'- -GCGUCGa--CGGUGUgGG-GGCUGUuccc -5'
19384 3' -59.7 NC_004685.1 + 26464 0.68 0.451176
Target:  5'- uGguGCUGCC-CGCCUCCacccAgAAGGGc -3'
miRNA:   3'- gCguCGACGGuGUGGGGGc---UgUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 12192 0.68 0.459672
Target:  5'- uGUGGCagGCCACGCCgCCGGacuacuuCAAGGa -3'
miRNA:   3'- gCGUCGa-CGGUGUGGgGGCU-------GUUCCc -5'
19384 3' -59.7 NC_004685.1 + 13145 0.67 0.489562
Target:  5'- aCGCGGaggGCCGCcuacgucgauaGCCCCCccuauGACAucguGGGGg -3'
miRNA:   3'- -GCGUCga-CGGUG-----------UGGGGG-----CUGU----UCCC- -5'
19384 3' -59.7 NC_004685.1 + 41562 0.67 0.499398
Target:  5'- uCGaCGGCUGCgguggGCGCCCCCacgGugGAGGu -3'
miRNA:   3'- -GC-GUCGACGg----UGUGGGGG---CugUUCCc -5'
19384 3' -59.7 NC_004685.1 + 9170 0.67 0.50932
Target:  5'- uGaCGGgUGUUcagguuccgaACACCCCCGACGaugauGGGGg -3'
miRNA:   3'- gC-GUCgACGG----------UGUGGGGGCUGU-----UCCC- -5'
19384 3' -59.7 NC_004685.1 + 25928 0.67 0.518321
Target:  5'- gGCGGgUGCCcgacucgAUGCCCCCaguccgaGCGGGGGa -3'
miRNA:   3'- gCGUCgACGG-------UGUGGGGGc------UGUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 52706 0.66 0.529406
Target:  5'- gGCAGguCUGCC-CACCCUCGcCGGccGGGc -3'
miRNA:   3'- gCGUC--GACGGuGUGGGGGCuGUU--CCC- -5'
19384 3' -59.7 NC_004685.1 + 23933 0.66 0.539558
Target:  5'- gCGCAGCgaacaCGCGCCgCCCGGCGAc-- -3'
miRNA:   3'- -GCGUCGacg--GUGUGG-GGGCUGUUccc -5'
19384 3' -59.7 NC_004685.1 + 21383 0.69 0.405618
Target:  5'- gGCGGgUGCCguguACACCgCgGugAAGGGc -3'
miRNA:   3'- gCGUCgACGG----UGUGGgGgCugUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 35963 0.69 0.388223
Target:  5'- cCGCaacGGCgagGUgUACACCCUCGGCAAGGa -3'
miRNA:   3'- -GCG---UCGa--CG-GUGUGGGGGCUGUUCCc -5'
19384 3' -59.7 NC_004685.1 + 5717 0.69 0.379711
Target:  5'- aCGCGGgUGCCAguCaCCCCGACAc--- -3'
miRNA:   3'- -GCGUCgACGGUguG-GGGGCUGUuccc -5'
19384 3' -59.7 NC_004685.1 + 39446 0.73 0.230769
Target:  5'- gGCGGCaaggGCCGCGCCUggguccaguuCCGGCAAGaGGu -3'
miRNA:   3'- gCGUCGa---CGGUGUGGG----------GGCUGUUC-CC- -5'
19384 3' -59.7 NC_004685.1 + 36370 0.72 0.254777
Target:  5'- uCGCGGUcGCCGCGCCCgaCGGCGgccuGGGc -3'
miRNA:   3'- -GCGUCGaCGGUGUGGGg-GCUGUu---CCC- -5'
19384 3' -59.7 NC_004685.1 + 17992 0.71 0.300951
Target:  5'- aGUGGCUGCCGCACCaCCgcaucggCGACgAAGGc -3'
miRNA:   3'- gCGUCGACGGUGUGG-GG-------GCUG-UUCCc -5'
19384 3' -59.7 NC_004685.1 + 61799 0.71 0.301666
Target:  5'- uGCGGCUGCCcgccgACaACCUCCGugGAGa- -3'
miRNA:   3'- gCGUCGACGG-----UG-UGGGGGCugUUCcc -5'
19384 3' -59.7 NC_004685.1 + 12867 0.7 0.31549
Target:  5'- cCGCAGCUcucGCCGCccaauccgcugcuGCCCUCGuCGAGcGGg -3'
miRNA:   3'- -GCGUCGA---CGGUG-------------UGGGGGCuGUUC-CC- -5'
19384 3' -59.7 NC_004685.1 + 34078 0.7 0.316231
Target:  5'- uCGCGGCUggGCCugGCuCCaCCGACAuGGu -3'
miRNA:   3'- -GCGUCGA--CGGugUG-GG-GGCUGUuCCc -5'
19384 3' -59.7 NC_004685.1 + 65252 0.69 0.371325
Target:  5'- aGCGGCaccgccaacCCACACCCuuGuCGGGGGu -3'
miRNA:   3'- gCGUCGac-------GGUGUGGGggCuGUUCCC- -5'
19384 3' -59.7 NC_004685.1 + 25702 0.69 0.379711
Target:  5'- --aGGCUGUCACGCUCCC-ACGGcGGGa -3'
miRNA:   3'- gcgUCGACGGUGUGGGGGcUGUU-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.