Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19389 | 5' | -56.4 | NC_004685.1 | + | 2589 | 1.09 | 0.000955 |
Target: 5'- cGUCGCAACGACAGCCUCGAGGUGGUCu -3' miRNA: 3'- -CAGCGUUGCUGUCGGAGCUCCACCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 3213 | 0.67 | 0.653248 |
Target: 5'- -gCGCGGCGGaaauGCCggggCGGGGUcggGGUCg -3' miRNA: 3'- caGCGUUGCUgu--CGGa---GCUCCA---CCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 3296 | 0.71 | 0.416942 |
Target: 5'- aUCGCAugGcUAcGCCUCGGGG-GGUUg -3' miRNA: 3'- cAGCGUugCuGU-CGGAGCUCCaCCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 3454 | 0.7 | 0.494468 |
Target: 5'- cGUUGCGgcGCGGCAGCCaaguUUGAGGUucuGGUg -3' miRNA: 3'- -CAGCGU--UGCUGUCGG----AGCUCCA---CCAg -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 4659 | 0.67 | 0.674743 |
Target: 5'- cGUCGagGAUGGCGuGCCgu-GGGUGGUCg -3' miRNA: 3'- -CAGCg-UUGCUGU-CGGagcUCCACCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 7789 | 0.73 | 0.315731 |
Target: 5'- -gCGCGACGGCcuguGGCaCUCGGGGccGGUCa -3' miRNA: 3'- caGCGUUGCUG----UCG-GAGCUCCa-CCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 8156 | 0.76 | 0.222467 |
Target: 5'- aUCGU--CGACAGCCUgGGGGUGGcCa -3' miRNA: 3'- cAGCGuuGCUGUCGGAgCUCCACCaG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 9793 | 0.75 | 0.228269 |
Target: 5'- uUCGCcuaccGCGGCcGCCgcggCGAGGUGGUCc -3' miRNA: 3'- cAGCGu----UGCUGuCGGa---GCUCCACCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 15057 | 0.67 | 0.674743 |
Target: 5'- uUCGCAcCG-CGGUgaCGAGGUGGcCg -3' miRNA: 3'- cAGCGUuGCuGUCGgaGCUCCACCaG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 16568 | 0.67 | 0.674743 |
Target: 5'- --aGCGACGACGGCggCGuGcUGGUCa -3' miRNA: 3'- cagCGUUGCUGUCGgaGCuCcACCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 17279 | 0.66 | 0.696082 |
Target: 5'- gGUCGuCGGCcACGGCUUCGAGcaGUGGg- -3' miRNA: 3'- -CAGC-GUUGcUGUCGGAGCUC--CACCag -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 17435 | 0.66 | 0.706668 |
Target: 5'- -gCGCGAUgaaGGCGGCCcUGccGGUGGUCa -3' miRNA: 3'- caGCGUUG---CUGUCGGaGCu-CCACCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 17626 | 0.69 | 0.546107 |
Target: 5'- -cCGCGACGACGcGCUcaccccCGAGGUGG-Cg -3' miRNA: 3'- caGCGUUGCUGU-CGGa-----GCUCCACCaG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 18411 | 0.75 | 0.240256 |
Target: 5'- cUCGCAcaGCGAgGGUgUCGAGGUGGa- -3' miRNA: 3'- cAGCGU--UGCUgUCGgAGCUCCACCag -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 18458 | 0.73 | 0.339199 |
Target: 5'- aUgGCGucCGACAGUCUCGGcauGGUGGUCc -3' miRNA: 3'- cAgCGUu-GCUGUCGGAGCU---CCACCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 20173 | 0.72 | 0.347298 |
Target: 5'- gGUCGaauACGGCuGCCcCGAGGUGGcCg -3' miRNA: 3'- -CAGCgu-UGCUGuCGGaGCUCCACCaG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 21616 | 0.67 | 0.631679 |
Target: 5'- -cCGCGAuCGAguGCUUCGAGcagcgGGUCg -3' miRNA: 3'- caGCGUU-GCUguCGGAGCUCca---CCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 28522 | 0.66 | 0.706668 |
Target: 5'- gGUCGCGggccGCGAgaAGCacgaCGuGGUGGUCa -3' miRNA: 3'- -CAGCGU----UGCUg-UCGga--GCuCCACCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 30353 | 0.69 | 0.535625 |
Target: 5'- -cCGCGccgcCGACAGCCUUGAGuccguuguacucGUGGUUg -3' miRNA: 3'- caGCGUu---GCUGUCGGAGCUC------------CACCAG- -5' |
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19389 | 5' | -56.4 | NC_004685.1 | + | 32198 | 0.68 | 0.566198 |
Target: 5'- -aCGCGggcuacgGCGGCGGCUUCaAGGUGGg- -3' miRNA: 3'- caGCGU-------UGCUGUCGGAGcUCCACCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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