miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19389 5' -56.4 NC_004685.1 + 9793 0.75 0.228269
Target:  5'- uUCGCcuaccGCGGCcGCCgcggCGAGGUGGUCc -3'
miRNA:   3'- cAGCGu----UGCUGuCGGa---GCUCCACCAG- -5'
19389 5' -56.4 NC_004685.1 + 66256 0.66 0.717183
Target:  5'- aUCGCAGCGGguCAGCCgCaGGGUGuUCa -3'
miRNA:   3'- cAGCGUUGCU--GUCGGaGcUCCACcAG- -5'
19389 5' -56.4 NC_004685.1 + 28522 0.66 0.706668
Target:  5'- gGUCGCGggccGCGAgaAGCacgaCGuGGUGGUCa -3'
miRNA:   3'- -CAGCGU----UGCUg-UCGga--GCuCCACCAG- -5'
19389 5' -56.4 NC_004685.1 + 17279 0.66 0.696082
Target:  5'- gGUCGuCGGCcACGGCUUCGAGcaGUGGg- -3'
miRNA:   3'- -CAGC-GUUGcUGUCGGAGCUC--CACCag -5'
19389 5' -56.4 NC_004685.1 + 35823 0.67 0.679026
Target:  5'- -gCGCAACGAgguCGGCCcguaucacccuggcaUCGAGGUGuUCc -3'
miRNA:   3'- caGCGUUGCU---GUCGG---------------AGCUCCACcAG- -5'
19389 5' -56.4 NC_004685.1 + 42692 0.67 0.674743
Target:  5'- uGUCGCcguCGGCAGgCagCGccuGGUGGUCu -3'
miRNA:   3'- -CAGCGuu-GCUGUCgGa-GCu--CCACCAG- -5'
19389 5' -56.4 NC_004685.1 + 3213 0.67 0.653248
Target:  5'- -gCGCGGCGGaaauGCCggggCGGGGUcggGGUCg -3'
miRNA:   3'- caGCGUUGCUgu--CGGa---GCUCCA---CCAG- -5'
19389 5' -56.4 NC_004685.1 + 43054 0.67 0.642468
Target:  5'- cGUCGguGCGGCGGUgCUCGccGcGGUCg -3'
miRNA:   3'- -CAGCguUGCUGUCG-GAGCucCaCCAG- -5'
19389 5' -56.4 NC_004685.1 + 21616 0.67 0.631679
Target:  5'- -cCGCGAuCGAguGCUUCGAGcagcgGGUCg -3'
miRNA:   3'- caGCGUU-GCUguCGGAGCUCca---CCAG- -5'
19389 5' -56.4 NC_004685.1 + 18458 0.73 0.339199
Target:  5'- aUgGCGucCGACAGUCUCGGcauGGUGGUCc -3'
miRNA:   3'- cAgCGUu-GCUGUCGGAGCU---CCACCAG- -5'
19389 5' -56.4 NC_004685.1 + 51594 0.71 0.407778
Target:  5'- aGUUGauccGCGACAGCCggaacCGAucGGUGGUCa -3'
miRNA:   3'- -CAGCgu--UGCUGUCGGa----GCU--CCACCAG- -5'
19389 5' -56.4 NC_004685.1 + 3296 0.71 0.416942
Target:  5'- aUCGCAugGcUAcGCCUCGGGG-GGUUg -3'
miRNA:   3'- cAGCGUugCuGU-CGGAGCUCCaCCAG- -5'
19389 5' -56.4 NC_004685.1 + 32198 0.68 0.566198
Target:  5'- -aCGCGggcuacgGCGGCGGCUUCaAGGUGGg- -3'
miRNA:   3'- caGCGU-------UGCUGUCGGAGcUCCACCag -5'
19389 5' -56.4 NC_004685.1 + 61043 0.68 0.566198
Target:  5'- uGUCGCcGCGAUAGCCccacguauccuggUCGuGGUuGUCg -3'
miRNA:   3'- -CAGCGuUGCUGUCGG-------------AGCuCCAcCAG- -5'
19389 5' -56.4 NC_004685.1 + 58696 0.68 0.56726
Target:  5'- -gCGCAggaacuccgGCGGCAGCUUCGAcG-GGUCg -3'
miRNA:   3'- caGCGU---------UGCUGUCGGAGCUcCaCCAG- -5'
19389 5' -56.4 NC_004685.1 + 2589 1.09 0.000955
Target:  5'- cGUCGCAACGACAGCCUCGAGGUGGUCu -3'
miRNA:   3'- -CAGCGUUGCUGUCGGAGCUCCACCAG- -5'
19389 5' -56.4 NC_004685.1 + 47593 0.66 0.727618
Target:  5'- cGUCaGCAGCG-CGGCgUCGAGcaucuucuUGGUCu -3'
miRNA:   3'- -CAG-CGUUGCuGUCGgAGCUCc-------ACCAG- -5'
19389 5' -56.4 NC_004685.1 + 49521 0.66 0.717183
Target:  5'- cGUCGaGACG-CGGCgUCGGGGacagcggGGUCu -3'
miRNA:   3'- -CAGCgUUGCuGUCGgAGCUCCa------CCAG- -5'
19389 5' -56.4 NC_004685.1 + 17435 0.66 0.706668
Target:  5'- -gCGCGAUgaaGGCGGCCcUGccGGUGGUCa -3'
miRNA:   3'- caGCGUUG---CUGUCGGaGCu-CCACCAG- -5'
19389 5' -56.4 NC_004685.1 + 49795 0.66 0.696082
Target:  5'- uUCGCAGaucaGGcCGGCCUCGuGGUacgGGUUc -3'
miRNA:   3'- cAGCGUUg---CU-GUCGGAGCuCCA---CCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.