miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19517 5' -57.2 NC_004685.1 + 54261 1.1 0.000791
Target:  5'- gUACGUCCCGGCGAGCUGUCCUCAACCu -3'
miRNA:   3'- -AUGCAGGGCCGCUCGACAGGAGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 15457 0.79 0.126887
Target:  5'- -cCGUCCCGGCGAGCcccUGUUCggaAACCg -3'
miRNA:   3'- auGCAGGGCCGCUCG---ACAGGag-UUGG- -5'
19517 5' -57.2 NC_004685.1 + 36563 0.77 0.157355
Target:  5'- cGCG-CCCGGCGAcGCggGUCCgaUCAACCu -3'
miRNA:   3'- aUGCaGGGCCGCU-CGa-CAGG--AGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 9115 0.76 0.184396
Target:  5'- aACGUUgCGcGCGAGCUGUCg-CAGCCg -3'
miRNA:   3'- aUGCAGgGC-CGCUCGACAGgaGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 33135 0.73 0.305462
Target:  5'- cGCGaagaagCCUGGCGAGCUGUCguucUUCGACa -3'
miRNA:   3'- aUGCa-----GGGCCGCUCGACAG----GAGUUGg -5'
19517 5' -57.2 NC_004685.1 + 22621 0.72 0.319687
Target:  5'- gGCGaccgccggggugaUCCCGGUGGGCUGcgucgccgCUUCGGCCa -3'
miRNA:   3'- aUGC-------------AGGGCCGCUCGACa-------GGAGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 10394 0.72 0.32045
Target:  5'- gACG-CCgCGGUGGGcCUGUCCUCAcaggaggugcagACCa -3'
miRNA:   3'- aUGCaGG-GCCGCUC-GACAGGAGU------------UGG- -5'
19517 5' -57.2 NC_004685.1 + 60351 0.71 0.377173
Target:  5'- -uCGUCgCCGGCGAGUcggGUUC-CGACCu -3'
miRNA:   3'- auGCAG-GGCCGCUCGa--CAGGaGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 38827 0.71 0.377173
Target:  5'- cGCGacUCCuCGGCGcgaaccuuGGC-GUCCUCGACCu -3'
miRNA:   3'- aUGC--AGG-GCCGC--------UCGaCAGGAGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 5573 0.71 0.403469
Target:  5'- gGCGagCCGGUGAGCUGggcggaugaCCcCGACCa -3'
miRNA:   3'- aUGCagGGCCGCUCGACa--------GGaGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 67966 0.7 0.421632
Target:  5'- aACGUCCCGaCGGGgUGUUCggaAACCg -3'
miRNA:   3'- aUGCAGGGCcGCUCgACAGGag-UUGG- -5'
19517 5' -57.2 NC_004685.1 + 66884 0.7 0.430896
Target:  5'- gGCaGUCCCacaGCGGGUcGUCCUCGGCg -3'
miRNA:   3'- aUG-CAGGGc--CGCUCGaCAGGAGUUGg -5'
19517 5' -57.2 NC_004685.1 + 27140 0.7 0.449776
Target:  5'- gGCGUgCCUGGCGAcGCUGUgCggUCAuagGCCa -3'
miRNA:   3'- aUGCA-GGGCCGCU-CGACAgG--AGU---UGG- -5'
19517 5' -57.2 NC_004685.1 + 10224 0.7 0.449776
Target:  5'- aGCuGUCCaaCGGCGAGCUGaCCgucaUCGACUg -3'
miRNA:   3'- aUG-CAGG--GCCGCUCGACaGG----AGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 5352 0.7 0.459385
Target:  5'- aGCGUCCaCGaGCcgaGGGUUG-CCUCGGCCc -3'
miRNA:   3'- aUGCAGG-GC-CG---CUCGACaGGAGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 39880 0.69 0.468126
Target:  5'- cACGgaacagCCCGGCGA--UGUCCUCGaagaacaccuugaGCCg -3'
miRNA:   3'- aUGCa-----GGGCCGCUcgACAGGAGU-------------UGG- -5'
19517 5' -57.2 NC_004685.1 + 40138 0.69 0.469102
Target:  5'- --gGUCauGGCG-GCgaUGUCCUCGGCCa -3'
miRNA:   3'- augCAGggCCGCuCG--ACAGGAGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 8612 0.69 0.488845
Target:  5'- -gUGUUCC-GUGAGCUGUCCaUCGGCg -3'
miRNA:   3'- auGCAGGGcCGCUCGACAGG-AGUUGg -5'
19517 5' -57.2 NC_004685.1 + 33075 0.69 0.488845
Target:  5'- -uUGcCCgCGGCGAGCgcacccgccagGUCCUCGGCg -3'
miRNA:   3'- auGCaGG-GCCGCUCGa----------CAGGAGUUGg -5'
19517 5' -57.2 NC_004685.1 + 52163 0.69 0.508969
Target:  5'- cGCGgCCCGGCGAaGUUGUUgaUGACCc -3'
miRNA:   3'- aUGCaGGGCCGCU-CGACAGgaGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.