miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19517 5' -57.2 NC_004685.1 + 4456 0.68 0.539778
Target:  5'- gGCGcCCCGGCGAGUg--CgUCGAUg -3'
miRNA:   3'- aUGCaGGGCCGCUCGacaGgAGUUGg -5'
19517 5' -57.2 NC_004685.1 + 5352 0.7 0.459385
Target:  5'- aGCGUCCaCGaGCcgaGGGUUG-CCUCGGCCc -3'
miRNA:   3'- aUGCAGG-GC-CG---CUCGACaGGAGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 5573 0.71 0.403469
Target:  5'- gGCGagCCGGUGAGCUGggcggaugaCCcCGACCa -3'
miRNA:   3'- aUGCagGGCCGCUCGACa--------GGaGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 6092 0.67 0.592383
Target:  5'- aUAgGUgaCGGCGGGCUGUCCggcgucaucguUCAcACCa -3'
miRNA:   3'- -AUgCAggGCCGCUCGACAGG-----------AGU-UGG- -5'
19517 5' -57.2 NC_004685.1 + 6909 0.68 0.529432
Target:  5'- gGCGUucCCCGGUGcgacGCagGUgCCUCAGCCc -3'
miRNA:   3'- aUGCA--GGGCCGCu---CGa-CA-GGAGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 8612 0.69 0.488845
Target:  5'- -gUGUUCC-GUGAGCUGUCCaUCGGCg -3'
miRNA:   3'- auGCAGGGcCGCUCGACAGG-AGUUGg -5'
19517 5' -57.2 NC_004685.1 + 9115 0.76 0.184396
Target:  5'- aACGUUgCGcGCGAGCUGUCg-CAGCCg -3'
miRNA:   3'- aUGCAGgGC-CGCUCGACAGgaGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 10224 0.7 0.449776
Target:  5'- aGCuGUCCaaCGGCGAGCUGaCCgucaUCGACUg -3'
miRNA:   3'- aUG-CAGG--GCCGCUCGACaGG----AGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 10394 0.72 0.32045
Target:  5'- gACG-CCgCGGUGGGcCUGUCCUCAcaggaggugcagACCa -3'
miRNA:   3'- aUGCaGG-GCCGCUC-GACAGGAGU------------UGG- -5'
19517 5' -57.2 NC_004685.1 + 14061 0.67 0.603029
Target:  5'- gGCG-CCC-GCGAGCgcggCUUCGGCCg -3'
miRNA:   3'- aUGCaGGGcCGCUCGaca-GGAGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 14068 0.66 0.667097
Target:  5'- gUAUGugaUCCCGGCuGAGCUGgacaCggCGACCc -3'
miRNA:   3'- -AUGC---AGGGCCG-CUCGACag--Ga-GUUGG- -5'
19517 5' -57.2 NC_004685.1 + 15457 0.79 0.126887
Target:  5'- -cCGUCCCGGCGAGCcccUGUUCggaAACCg -3'
miRNA:   3'- auGCAGGGCCGCUCG---ACAGGag-UUGG- -5'
19517 5' -57.2 NC_004685.1 + 17875 0.66 0.69884
Target:  5'- aGCGUCaCCGacauugagacGUG-GCUGUCCaUCAACUu -3'
miRNA:   3'- aUGCAG-GGC----------CGCuCGACAGG-AGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 18216 0.67 0.613699
Target:  5'- cGCGgaCUGGauCGAGCUGUCgUCGGCUg -3'
miRNA:   3'- aUGCagGGCC--GCUCGACAGgAGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 22469 0.66 0.667097
Target:  5'- cGgGUCgCGGCGAGCUGgaCCUCc--- -3'
miRNA:   3'- aUgCAGgGCCGCUCGACa-GGAGuugg -5'
19517 5' -57.2 NC_004685.1 + 22621 0.72 0.319687
Target:  5'- gGCGaccgccggggugaUCCCGGUGGGCUGcgucgccgCUUCGGCCa -3'
miRNA:   3'- aUGC-------------AGGGCCGCUCGACa-------GGAGUUGG- -5'
19517 5' -57.2 NC_004685.1 + 22816 0.66 0.667097
Target:  5'- gACGgggcaaccCCUGGCGAGCUGggcaCCUau-CCg -3'
miRNA:   3'- aUGCa-------GGGCCGCUCGACa---GGAguuGG- -5'
19517 5' -57.2 NC_004685.1 + 27140 0.7 0.449776
Target:  5'- gGCGUgCCUGGCGAcGCUGUgCggUCAuagGCCa -3'
miRNA:   3'- aUGCA-GGGCCGCU-CGACAgG--AGU---UGG- -5'
19517 5' -57.2 NC_004685.1 + 28102 0.67 0.635075
Target:  5'- gGCGUUcgCCGcGCaGcAGCUGUCCagggCGACCa -3'
miRNA:   3'- aUGCAG--GGC-CG-C-UCGACAGGa---GUUGG- -5'
19517 5' -57.2 NC_004685.1 + 30189 0.67 0.603029
Target:  5'- gGCGUCguCCGGCucGCUGaugaCCUCAccgACCa -3'
miRNA:   3'- aUGCAG--GGCCGcuCGACa---GGAGU---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.