Results 21 - 36 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 34073 | 0.68 | 0.644075 |
Target: 5'- aAGGCCGC-CAACGgCUGGucCGAUCCa- -3' miRNA: 3'- -UUCGGUGaGUUGCgGACU--GUUAGGcg -5' |
|||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 36208 | 0.7 | 0.529158 |
Target: 5'- cGGGCCugUCAuuugGCUUGGCGAcggggauuuggguuUCCGCg -3' miRNA: 3'- -UUCGGugAGUug--CGGACUGUU--------------AGGCG- -5' |
|||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 37504 | 0.66 | 0.775212 |
Target: 5'- cGGCCACgugUAGCGCgCUucGGCGAUaCGCa -3' miRNA: 3'- uUCGGUGa--GUUGCG-GA--CUGUUAgGCG- -5' |
|||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 38405 | 0.68 | 0.688968 |
Target: 5'- -cGCUGCUCAuCGCCgcgGGCAucAUCgGCc -3' miRNA: 3'- uuCGGUGAGUuGCGGa--CUGU--UAGgCG- -5' |
|||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 38820 | 0.67 | 0.710017 |
Target: 5'- cGGCCACUacgucaaCGACGCCgcccGCAagAUCUGCu -3' miRNA: 3'- uUCGGUGA-------GUUGCGGac--UGU--UAGGCG- -5' |
|||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 39662 | 0.68 | 0.655343 |
Target: 5'- --uCCACgaCAACGCC--ACGAUCCGCu -3' miRNA: 3'- uucGGUGa-GUUGCGGacUGUUAGGCG- -5' |
|||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 39921 | 0.73 | 0.399651 |
Target: 5'- -cGCCAUUCAGCGCaCUGccgGCGGUCCcaGCc -3' miRNA: 3'- uuCGGUGAGUUGCG-GAC---UGUUAGG--CG- -5' |
|||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 42600 | 0.66 | 0.775212 |
Target: 5'- gGGGCUugUCuuCGCCgggGAUAAUgCCaGCg -3' miRNA: 3'- -UUCGGugAGuuGCGGa--CUGUUA-GG-CG- -5' |
|||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 43303 | 0.69 | 0.598992 |
Target: 5'- gAAGCCACUCggUGaUCUcuaGACAGucUCCGUg -3' miRNA: 3'- -UUCGGUGAGuuGC-GGA---CUGUU--AGGCG- -5' |
|||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 44008 | 0.69 | 0.610243 |
Target: 5'- cAAGCCACUCggUGaUCUcuaGACAGucUCCGUg -3' miRNA: 3'- -UUCGGUGAGuuGC-GGA---CUGUU--AGGCG- -5' |
|||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 47017 | 0.7 | 0.554377 |
Target: 5'- aGAGCCACUguugauCGgCUGGCAGUCCa- -3' miRNA: 3'- -UUCGGUGAguu---GCgGACUGUUAGGcg -5' |
|||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 51966 | 0.72 | 0.458454 |
Target: 5'- -uGCC--UCGACGCCgucGACAucAUCCGCg -3' miRNA: 3'- uuCGGugAGUUGCGGa--CUGU--UAGGCG- -5' |
|||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 53727 | 0.7 | 0.532425 |
Target: 5'- -cGCCAUUCAACGCCaGAucuaCAAUCagauCGCg -3' miRNA: 3'- uuCGGUGAGUUGCGGaCU----GUUAG----GCG- -5' |
|||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 54493 | 0.72 | 0.418719 |
Target: 5'- aGGGCCACUU--CGCCUG-CGAgCCGCc -3' miRNA: 3'- -UUCGGUGAGuuGCGGACuGUUaGGCG- -5' |
|||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 55178 | 0.73 | 0.363225 |
Target: 5'- cAGCCGC-CGACGCCcaccaAAUCCGCa -3' miRNA: 3'- uUCGGUGaGUUGCGGacug-UUAGGCG- -5' |
|||||||
19554 | 5' | -53.4 | NC_004686.1 | + | 56047 | 0.74 | 0.354485 |
Target: 5'- cGGCCGCgu--CGCCUGGCGGUUCGg -3' miRNA: 3'- uUCGGUGaguuGCGGACUGUUAGGCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home